Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1090 ATGGCACTTTCTATGCACAAGGACTCAGCCAACAACCAGATGGATTCAAGCAAGTATGTGAGGTACACACCAGAGCAGGTTGAGGCTTTGGAGAGGGTCTATGCTGAATGCCCTAAGCCAAGTTCCTTGAGGAGGCAGCAACTCATCAGAGAGTGCCCCATACTTTCCAACATTGAACCCAAACAGATCAAAGTTTGGTTCCAGAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAAGCTTCTCGCTTGCAGACAGTGAACAGAAAGCTGACTGCAATGAACAAGCTGTTAATGGAGGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTGTATGAGAATGGTTACATGAAGCAACAGATACACACTGCTTCTGCTGGTACTACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCAACACCTCAGCATCCCAACCGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGGTTGCTGAAATTCTCAAAGATCGACAGTCGTGGTATCGTGACTGTCGATGCGTGGATGTGTTGAGTATAGTCCCCACTGGAAATGGGGGCACCATAGAGCTCATGTACATGCAGACATATGCGCCCACAACTTTGGCAGCAGCACGGGACTTTTGGACACTGAGATACACGACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCCTTGACATCCTCAACTGGTGGCCCAGCAGGGCCTCCTTCTACTACTTTTGTAAGAGCTGAAATGCTTCCCAGTGGTTTTCTAATTAGACCATGTGAGGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTACCTGAAGTACTGAGGCCGCTGTATGAATCATCAAAAATCTTGGCTCAGAAGTTGACAATTGCTGCCTTGCAACATATAAGACAGATAGCACTAGAATCAAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGGGGCTTTAATGATGCTGTGAATGGGTTTGTTGATGATGGCTGGTCACTGATGGGTACTGATGGAGTGGAAGATGTGACTATAGCCATAAACTCATCTCCAAACAAATTTTTGGGCTCCAATTACAACGCATCAATGTTTCCAGCATTTGGAGGTGGGGTCTTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGGTTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGAGTTGATGCATACTCTGCCGCATGCCTTAAAGCTAGTCCCTATGCAGTTCCTTGTGCAAGACCTGGAGGCTTCCCCAGCACCCAGGTCATTTTACCCCTTGCTCATACTATTGAGCACGAGGAGTTCCTGGAGGTAGTTCGAATAGAGGGTCATGCATTTTCTCCTGAGGACGTAGCGATGGCACGCGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAGTGCAGTTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGATGAGTCATTTGCTGATGATGCTCTGTTACTGCCATCTGGTTTTCGTGTCATTCCGTTGGATCCTAAATCAGATGGTCCAGCTCCAACTAGGACATTAGATTTGGCATCAACGATGGAAGTAGGTTCTGGTAATGCCCGTCCAGCTGGGGAAGCAGACTTGAATGGGTACAACCTTAGGTCGGTCCTCACTATTGCTTTCCAATTTACCTTTGAGAACCATACACGGGACAATGTGGCTGCTATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGATCAGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCCAGGCTCAATACCCAGTTGGCTCCAAAGTCTCTTCCTGGTTCGCCTGAGGCCCTTACCTTAGCCCGGTGGATCTTTAGAAGCTATAGGATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATCCCGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCTCCAGTGTTTACCTTTGCGAACCAAGCTGGGTTAGACATGCTTGAAACTACTCTTGTCGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAATCTAGCAGGAAGATTCTTTGCTGTGAGTTCTCCAAGATAATGCAACAGGGTTTTGCATATCTCCCAGCAGGAATATGTGCATCAAGTATGAATCGGCCAGTATCTTATGAGCAGGCTGTTGCATGGAAAGTCCTCAATGATGATGATTCTAATCACTGCCTAGCATTCATGTTCATGAATTGGTCTTTTGTATAA 2541 0.4726 MALSMHKDSANNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAGTTTDNSCESVVMSGQNQQQNPTPQHPNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPAGPPSTTFVRAEMLPSGFLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIALESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGTDGVEDVTIAINSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSTQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVAMARDMYLLQLCSGVDESAVGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAPTRTLDLASTMEVGSGNARPAGEADLNGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLNTQLAPKSLPGSPEALTLARWIFRSYRMHTGTELFKAESTAGDAILKQLWHHPDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESSRKILCCEFSKIMQQGFAYLPAGICASSMNRPVSYEQAVAWKVLNDDDSNHCLAFMFMNWSFV* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1090 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Gso15g1090 846 SUPERFAMILY Bet v1-like 167 376 - -
Gso15g1090 846 Pfam START domain 167 374 IPR002913 GO:0008289
Gso15g1090 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Gso15g1090 846 Pfam MEKHLA domain 701 845 IPR013978 -
Gso15g1090 846 CDD bZIP 70 109 - -
Gso15g1090 846 MobiDBLite consensus disorder prediction 128 157 - -
Gso15g1090 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Gso15g1090 846 SUPERFAMILY Bet v1-like 414 601 - -
Gso15g1090 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 846 IPR044830 GO:0003700
Gso15g1090 846 Coils Coil 87 107 - -
Gso15g1090 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 846 - -
Gso15g1090 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Gso15g1090 846 Gene3D - 185 372 IPR023393 -
Gso15g1090 846 SMART START_1 166 376 IPR002913 GO:0008289
Gso15g1090 846 MobiDBLite consensus disorder prediction 128 160 - -
Gso15g1090 846 Gene3D - 9 84 - -
Gso15g1090 846 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Gso15g1090 846 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Gso15g1090 846 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1090 Gso-Chr15 10410230 10416068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1090 5 846 Homeobox Transcription Factor Family AT2G34710 80.378 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso15g1090 START 2.6e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1090 K09338 - gmx:100807428 1687.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1090 15 10410230 10416068 Gso15g1090 15 10410230 10416068 ECH
Gso15g1090 15 10410230 10416068 Gso9g0204 9 1893784 1899946 GST