Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1079 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCTCCCTCCTCCGCCGCCGCCGCCGTTCCCTCCGGCCCCCTCGTCCAGCACGACTCCTCCGCGGCAGCTTCCGCCGTGTCCAACGGAGGCCACGCCGCCCCCGCCCCGTCCACGGCGGACCCCGCCGGCGGCAACGTCCCGGGGCGGCGGAGCTTCCGGCAGACGGTTTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGAGGATGCCGGTGTGCCGCTTCTTCAGGCTCTACGGAGAGTGCCGAGAACAGGATTGCGTCTATAAACACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGACCTGATTGTCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTTCTTCAAAAGATCCAACATTTATTTTCCTACAATTATAACTCATCCAACAAATTTTTCCAACAAAGAGGTGCTAGTTATAATCAACAAGCTGAAAAACCCCAGCTTCCTCAAGGAACTAATTCTACAAACCAAGGGGTGACTGGAAAACCATTACCAGCAGAGTCGGGAAATGCCCAGCCACAGCAACAAGTTCAGCAGTCCCAGCAGCAGGTTAACCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCTAATCAAGCAAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTTTGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTAGTTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGGAATTGGAAATATGCTCATGGAACTGCACATTATGGACGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGAGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCGGTTGCAGCCGAATCTAAACGGGAAGAAGAGAAAGCCAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTACCATTTGAAGACAATGAAGAAGAGGAAGAAGAAGAGAGTGATGAAGAGGAGGAGAGCTTCAGTCATGGTGTAGGGCCAGCTGGCCAAGGCAGAGGTAGGGGAAGAGGTATGATGTGGCCGCCTCATATGCCTCTTGGGCGTGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCGTATGGGCCTGTTGGTCCTGTTGGACCTGATGGCTTTGGTATGCCAGATCTTTTCGGTGTGGGACCCCGTGGTTTTGCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGTCCCCCAGCAGCCATGATGTTTCGTGGGCGACCATCTCAACCTGGGATGTTTCCAAGTGGTGGGTTTGGGATGATGATGAATCCTGGACGTGGTCCTTTCATGGGTGGGATGGGGGTTGGAGGTGCAAATCCACCAAGAGGTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCGCTACCACAGAACGCAAACCGTGCTGCCAAAAGAGATCAAAGAACTGCTGATCGGAATGATAGGTTTGGTTCAGGATCCGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGCGGACCTGATGATGACGCACAGTATCAACAAGGATACAAAGGGAACCAAGATGATCATCCTGCTGTGAACAACTTCAGGAATGATGATAGTGAAAGTGAGGACGAGGCACCTAGGAGGTCAAGACATGGAGAGGGGAAAAAGAAACACAAACTATAA 2076 0.499 MEDSEGVLSFDFEGGLDAAPSSAAAAVPSGPLVQHDSSAAASAVSNGGHAAPAPSTADPAGGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLFSYNYNSSNKFFQQRGASYNQQAEKPQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQQVNQSQMQNVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFSHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVGPVGPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPSGGFGMMMNPGRGPFMGGMGVGGANPPRGGRPVNMPPMFPPPPPLPQNANRAAKRDQRTADRNDRFGSGSEQGKSQDMLSQSGGPDDDAQYQQGYKGNQDDHPAVNNFRNDDSESEDEAPRRSRHGEGKKKHKL* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1079 691 MobiDBLite consensus disorder prediction 433 451 - -
Gso15g1079 691 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Gso15g1079 691 MobiDBLite consensus disorder prediction 37 66 - -
Gso15g1079 691 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Gso15g1079 691 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Gso15g1079 691 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Gso15g1079 691 MobiDBLite consensus disorder prediction 626 661 - -
Gso15g1079 691 MobiDBLite consensus disorder prediction 587 605 - -
Gso15g1079 691 MobiDBLite consensus disorder prediction 409 472 - -
Gso15g1079 691 MobiDBLite consensus disorder prediction 575 691 - -
Gso15g1079 691 Pfam YT521-B-like domain 338 393 IPR007275 GO:0003723
Gso15g1079 691 Pfam YT521-B-like domain 259 321 IPR007275 GO:0003723
Gso15g1079 691 MobiDBLite consensus disorder prediction 662 681 - -
Gso15g1079 691 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 689 - -
Gso15g1079 691 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 689 IPR045168 -
Gso15g1079 691 MobiDBLite consensus disorder prediction 183 253 - -
Gso15g1079 691 ProSiteProfiles YTH domain profile. 259 394 IPR007275 GO:0003723
Gso15g1079 691 Gene3D - 65 127 - -
Gso15g1079 691 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Gso15g1079 691 MobiDBLite consensus disorder prediction 611 625 - -
Gso15g1079 691 Gene3D ph1033 like domains 237 397 - -
Gso15g1079 691 SUPERFAMILY CCCH zinc finger 69 100 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1079 Gso-Chr15 10249292 10259421 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g1079 YTH 1.3e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1079 K14404 - gmx:100802826 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1079 15 10249292 10259421 Gso9g0193 9 1752452 1760362 GST