Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1072 ATGAAGGAAGGTGGTGGTAGAAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTGAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTCCCAGCAGATGAACCCCAAAAGTTTGCAAACGTGCACAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTTTACGGGTGCGTTGGGGCCATCTCTTCACTTCAGCAACAGATTGATGTGCTACAGACGCAATTGGCCCTGGCCCAGGCTGAGGTGGCCCATCTTCGGGCGAGACAAAACAGATGCTTTTCCCATCATGGGCTTAGGCCAACTAGCCCAACCACTAGTGGTTTTCCATCATCCAAGACCTTGGACTCACATGCTAAGCCTATTTTTGACATAGACATGGTGGACCAGGTTCGCTATGGTGCTTCAATGTGGTCATGA 513 0.5049 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRARQNRCFSHHGLRPTSPTTSGFPSSKTLDSHAKPIFDIDMVDQVRYGASMWS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1072 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Gso15g1072 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
Gso15g1072 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 154 - -
Gso15g1072 170 Coils Coil 93 120 - -
Gso15g1072 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1072 Gso-Chr15 10188050 10193172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1072 1 170 AS2 family AT1G31320 77.907 3.63e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso15g1072 LOB 1.8e-43 No_clan