Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1061 ATGGGGGATCAGGGTGTTTTAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAAGAAGCGTGGAAAGAGACCGAGGAAATTGTAGTCGAAGGGTTGAAGGATGAGCTTGATGAATTTTCAGTGAAGATGTTCTTCAAGGGGTTGTCAATGGCTGGTGTTGAAAATTCAAGTTCTGGGTTTTCTGGGATTGGAGTGTTCATGGAAAGGTCTTCAGGTTTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAATCAATGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTACCCAGAACAAGATCCGCAGGGTTTTTGCTTTCACTGATTCTGAGTTGTTGCACGACCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACCGCACTGAGAGAAAGGATTCTGGAACTTGCCAACAATTTTGAAGATTTTGTTTTAAACCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGATATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTGAAATGTTTGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAATTCCCTATAAGATGCCCTCAACCAAGATGCAAGTATTGCATGTCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCATCTCCTTTGGATCACTGGAGAAAGCCCTTTCCGAAGAAAATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGCCAGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTTTAGAATACCAGAACCTGCCAGAGAAGGAGAGGGATGTTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGCTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCAGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATCGTGGACGCATACTCAGACCAAGAACGATCGCAGCTTGCACTTATTCAAAGGTTCCTAGCTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCTGTACAGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGATGATTACATTCAATGA 1545 0.4317 MGDQGVLGVNVGREEEEDEFCSCCGDEDEEAWKETEEIVVEGLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVFMERSSGFPAIRVQKKLDFYAEESMVDYLALLDGLLEATQNKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLNLIPSTDLEQPLHLAKVAIGLVTFPVNGEILLKNCSICCDDKPVPIMITLKCLHTFCSHCLRAYADGKVQSCQFPIRCPQPRCKYCMSVTECRSFLPFISFGSLEKALSEENIDHSDRIYCPFPNCSVLLDPHECSSARASSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCLEYQNLPEKERDVSDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGYEFCYSCGAEYREGQQTCQCAYWDEDNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYDDYIQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1061 514 Gene3D - 337 461 - -
Gso15g1061 514 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 513 - -
Gso15g1061 514 Gene3D - 54 186 IPR036397 GO:0003676
Gso15g1061 514 SUPERFAMILY Ribonuclease H-like 67 169 IPR012337 -
Gso15g1061 514 SMART ibrneu5 267 339 IPR002867 -
Gso15g1061 514 SMART ibrneu5 349 408 IPR002867 -
Gso15g1061 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Gso15g1061 514 Pfam Reverse transcriptase-like 63 169 IPR002156 GO:0003676|GO:0004523
Gso15g1061 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 513 IPR031127 GO:0004842|GO:0016567
Gso15g1061 514 SUPERFAMILY RING/U-box 199 260 - -
Gso15g1061 514 SUPERFAMILY RING/U-box 350 416 - -
Gso15g1061 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 278 IPR013083 -
Gso15g1061 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Gso15g1061 514 Pfam IBR domain, a half RING-finger domain 358 408 IPR002867 -
Gso15g1061 514 Pfam IBR domain, a half RING-finger domain 276 339 IPR002867 -
Gso15g1061 514 ProSiteProfiles Zinc finger RING-type profile. 200 247 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1061 Gso-Chr15 10034140 10040113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1061 51 399 C3H Transcription Factor Family AT2G19610 25.348 1.99e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1061 - - gmx:100783040 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1061 15 10034140 10040113 Gso15g1061 15 10034140 10040113 ECH
Gso15g1061 15 10034140 10040113 Gso9g0175 9 1562442 1567723 GST