Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1001 ATGGACCTCTTCACCGGCGACCACTTCCCCGTCCCCGACCACGTCGCTCCGTTCCCCGATTCCGGCGACCTCCTCTTCGCCGCCGACCTCCTCTCCCACCGCCACAACCCCCAGAAGCTCCGCCCCATCAGGTCCGTCCCCACCGCCCCCATTGCCAACCCTTCTCCTCCCCCTCTCTCGCACGATCCGATTCCCTCCGGGTCGGGTCACGCCCCATGCCACGAATCCAGCTTGTCTTTTGATGCTGAGGATGAAGATGAGGATGATGACAATTCATCAGCAAGTACCAAAGGACATGGCCCTAGAAAGAAAAGGAGAAAGATGGTGAGAAAGCTCGAAGATTTTGCGAAGGATTTGGTGGTGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAACAGTTATTGGAAATCATAGAAAACAATGAAAGGGAAAGAATAAAGAGAGAAGCAGCTTGGAAGAATGAGGAGATGGAGAGAATCAGAAAAGATGAAGAGGCTAGAGCCCAAGAAAATTCTCGAAATTTGGCCCTCATATCCTTCATTCAGAACCTGTTGGGCCATGAAATTCAAATCCCCCAACAACCTGCAAAACCATGCAGCAAAAGAGAAGAGGATGAAGTTGAGGCAAGTGCTAGAAAAGAACTGAACAATGATCCAGGTGACAATAGATGGCCTGATGTTGAAGTGCAATCACTCATCACTGTGAGAACTTCATTGGAGCACAAGTTTCGTCTCATGGGATCAAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGAATGGCATGGGGTACAACCGCTCTGCAAAAAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAAAGGACAATAGGGAGTGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGCCCTTACTTTGATGAGTTGGACATTCTGTATAGAAAGGGTCTCTTAAGTATTGGAAATGCCTTGAGCAATACCTGCTGTGTTCCCCAGATTGAAGTAAAGGAGTTGAATGAAACTTGA 1017 0.4739 MDLFTGDHFPVPDHVAPFPDSGDLLFAADLLSHRHNPQKLRPIRSVPTAPIANPSPPPLSHDPIPSGSGHAPCHESSLSFDAEDEDEDDDNSSASTKGHGPRKKRRKMVRKLEDFAKDLVVKVMEKQEQMHKQLLEIIENNERERIKREAAWKNEEMERIRKDEEARAQENSRNLALISFIQNLLGHEIQIPQQPAKPCSKREEDEVEASARKELNNDPGDNRWPDVEVQSLITVRTSLEHKFRLMGSKGSIWEEISEAMNGMGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKTCPYFDELDILYRKGLLSIGNALSNTCCVPQIEVKELNET* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1001 338 MobiDBLite consensus disorder prediction 198 221 - -
Gso15g1001 338 ProSiteProfiles Myb-like domain profile. 216 280 IPR001005 -
Gso15g1001 338 PANTHER - 70 328 - -
Gso15g1001 338 Coils Coil 124 174 - -
Gso15g1001 338 MobiDBLite consensus disorder prediction 37 108 - -
Gso15g1001 338 MobiDBLite consensus disorder prediction 49 63 - -
Gso15g1001 338 CDD GT1 222 286 - -
Gso15g1001 338 Pfam Myb/SANT-like DNA-binding domain 222 307 IPR044822 -
Gso15g1001 338 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 70 328 - -
Gso15g1001 338 MobiDBLite consensus disorder prediction 193 223 - -
Gso15g1001 338 Gene3D - 224 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1001 Gso-Chr15 9308119 9310371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1001 103 311 Trihelix Transcription Factor Family AT5G47660 44.395 8.00e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso15g1001 Myb_DNA-bind_4 2.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1001 - - gmx:100815105 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1001 15 9308119 9310371 Gso9g0120 9 1043620 1045800 GST