Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0997 ATGGGCAATGTCAATGGGAGAGACGATGTTAATGGTACTCCATCGGGAACCGAAGGAGAAGAAGAAGAAGCCGGAGAAGAGGGTGGTTCTGACAGTGTCGCCGATTGCATGTCTTCCAACCCTGGCCATCGTGCGCCTTCCGAGTTGATGGGTCATTCTCCCCCTGCTAGCCCTAGAGCAACCCAATCTCCATTCATGTTCACCCCACAAGTTCCGGTGGTTCCGCTACAAAAACCTGATGAGATGCATGCTCCAAGCCCTTCCTGGATGCAGACTACATCAGGATATGAGGATATGTACTGTGAACTAGGGATTCCAACGATGATTACTTGGGGCTATGATGGGAAGGAAGTTGCTGTGGAGGGTTCGTGGGATAATTGGAAAACAAGAATGGCTTTACAGAGATCAGGGAAGGACTTCACAATAATGAAGGTGCTGCCATCTGGTGTATACCAATTTAGATTTATTGTGGATGGGCAGTGGAGGTACGCACCTGACTTGCCTTGGGCTCAAGATGATGCTGGGAATGCATACAACATTTTGGACTTGCAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGCTATAACAACTTACAACTTAGTTCTGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATATTTACAAATGACGCTTCTTAACATTCCGTCAACAAATATGGAAGTCCAACCTCTTACATCCAGACCTCAGCATGTGGTACTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTTGCCCTTGGTACGACTCATCGGTTTGTAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 879 0.463 MGNVNGRDDVNGTPSGTEGEEEEAGEEGGSDSVADCMSSNPGHRAPSELMGHSPPASPRATQSPFMFTPQVPVVPLQKPDEMHAPSPSWMQTTSGYEDMYCELGIPTMITWGYDGKEVAVEGSWDNWKTRMALQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEVQPLTSRPQHVVLNHLYMQKGKGSPSVVALGTTHRFVAKYVTVVLYKSLQR* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0997 292 SUPERFAMILY E set domains 105 190 IPR014756 -
Gso15g0997 292 SUPERFAMILY AMPKBI-like 187 289 IPR037256 -
Gso15g0997 292 MobiDBLite consensus disorder prediction 15 29 - -
Gso15g0997 292 Pfam Glycogen recognition site of AMP-activated protein kinase 105 184 IPR032640 -
Gso15g0997 292 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 292 - -
Gso15g0997 292 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 218 288 IPR006828 GO:0005515
Gso15g0997 292 SMART AMPKBI_2 200 290 IPR006828 GO:0005515
Gso15g0997 292 MobiDBLite consensus disorder prediction 1 65 - -
Gso15g0997 292 CDD E_set_AMPKbeta_like_N 106 182 - -
Gso15g0997 292 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 292 IPR043554 -
Gso15g0997 292 Gene3D - 193 290 - -
Gso15g0997 292 Gene3D Immunoglobulins 102 187 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0997 Gso-Chr15 9285204 9288204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0997 107 185 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 3.06e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0997 K07199 - gmx:100777497 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0997 15 9285204 9288204 Gso9g0116 9 1015752 1019070 GST
Gso17g0046 17 542919 545503 Gso15g0997 15 9285204 9288204 PCT