Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0976 ATGGTTTCGCTGGAGGAATCTCGCTCGAATTCGAGCCGTTTCCCCTTGGCGAGGAGTTACCAGTACCACTCCTCGGTTTCGTCCAAAACGCAGCGTCAAATTGGAAGGTCCATGCGCACTATACGCTCCAATTTCTTCCAAGACGACAACAGCAGCAGCTGCTCCTTCACCGAGAAATCCACGTGTCTCTCGGAAAACCTCACCGACTCCGTCGTCGACCTCCGTCTCGGCGAGCTGGCGCTGCGGAACAGCAAATCGGTGAAATACTCGCCGACGGAGGAGGAGCTCCTCGATTTGTCGCAGGCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGTCTGGCCACGCTGCCGTCGCCGAAGAAGAGCGACTTCTCCGGCGAGAACGAGGCGCCGGAGCCGGAGATTGAGCCCTGCATGGGGTTCCTGCAGAGGGAGAATTTCTCTACGGAGATCATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATGTGCATCGACGGCCTCCAGTCGCAGTCGGTGGCGGTGAAGCGCTCCGCCGCGGCGAAACTCCGCCTACTCGCAAAAAACCGCGCCGACAACCGCGTTCTGATCGCGGAGTCCGGCGCCGTCCCCGTCCTCGCTCCGCTTCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCTGTCACCGCGCTGTTAAACCTCTCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCCGGAGCAGTGAAGTCTCTGGTTTATGTTCTAAAGACCGGAACCGAAACTTCGAAGCAGAACGCGGCGTGCGCGCTTCTAAGCCTTGCTTTGGTGGAAGAGAACAAGAGCTCGATCGGGGCTTCAGGTGCGATACCGCCGCTGGTTTCTTTGCTTCTGAATGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAGCTCTGTTCGGTGAGGCAGAACAAGGAGAGAACGGTGAGTGCCGGCGCGGTGAAGCCGCTGGTGGAGCTAGTGGCGGAGCAGGGGAGCGGCATGGCGGAGAAGGCCATGGTGGTGCTGAATAGCCTGGCGGGGATTCAGGAAGGGAAAAATGCGATTGTTGAAGAAGGTGGAATTGCTGCTCTTGTGGAAGCTATTGAGGATGGGTCTGTGAAAGGGAAGGAATTTGCGGTTTTGACACTTCTTCAGCTCTGTGTTGATAGTGTCAGAAACAGAGGGTTTCTTGTTAGGGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAAACTGGGAGTGTTCGAGCTAAGCACAAGGCTGAAACACTTCTTCGATATTTGAGGGAATCAAGACAAGAGGCAGCATCTACTTCAAGTTCTTAG 1374 0.5662 MVSLEESRSNSSRFPLARSYQYHSSVSSKTQRQIGRSMRTIRSNFFQDDNSSSCSFTEKSTCLSENLTDSVVDLRLGELALRNSKSVKYSPTEEELLDLSQAFSDFSACSSDISGELQRLATLPSPKKSDFSGENEAPEPEIEPCMGFLQRENFSTEIIESISPEDLQPTVKMCIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLAPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLVYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERTVSAGAVKPLVELVAEQGSGMAEKAMVVLNSLAGIQEGKNAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEAASTSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0976 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Gso15g0976 457 PANTHER U BOX DOMAIN-CONTAINING 6 453 - -
Gso15g0976 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Gso15g0976 457 SUPERFAMILY ARM repeat 166 445 IPR016024 -
Gso15g0976 457 Gene3D - 150 309 IPR011989 -
Gso15g0976 457 Gene3D - 310 454 IPR011989 -
Gso15g0976 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 453 - -
Gso15g0976 457 SMART arm_5 406 446 IPR000225 GO:0005515
Gso15g0976 457 SMART arm_5 364 404 IPR000225 GO:0005515
Gso15g0976 457 SMART arm_5 323 363 IPR000225 GO:0005515
Gso15g0976 457 SMART arm_5 241 281 IPR000225 GO:0005515
Gso15g0976 457 SMART arm_5 282 322 IPR000225 GO:0005515
Gso15g0976 457 SMART arm_5 200 240 IPR000225 GO:0005515
Gso15g0976 457 Pfam Armadillo/beta-catenin-like repeat 284 322 IPR000225 GO:0005515
Gso15g0976 457 Pfam Armadillo/beta-catenin-like repeat 202 239 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0976 Gso-Chr15 9090353 9093423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0976 110 449 U-box Gene Family AT2G23140 45.170 5.35e-84 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0976 - - gmx:100818658 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0976 15 9090353 9093423 Gso9g0093 9 848013 850684 GST
Gso7g2259 7 46201769 46203872 Gso15g0976 15 9090353 9093423 PCT
Gso17g0062 17 653906 656884 Gso15g0976 15 9090353 9093423 PCT