LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g0955	ATGGCGGGGTCATGTTTCCACGGGCTTAGGCTAAGGATGTCTAAGAGTAAAGCTTTACCAGACCCTTCATCTTCCTCCAAGACCCAGTTGGAGAGTGACGCGGAGAACGTAGAAAGGAAGAGATTTGATAGCATGGAATCGTGGTCATTGATATTCGACTCAATGGAGACATGGGAGACTTCAAAGGAGGACCAGGAGGGAGAAAAAGAGGAATGGGCTGCAGACCTGTCTCAGCTTTTTATAGGTAGCAAGTTTGCTTCTGGAGCTCACAGCCGAATTTACCGTGGAATCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAAGATTCCATCCCAGGATGAGGAGAAAAAGGCCTTACTAGAGGAGCAATTTAACTTTGAAGTGGCTTTGCTTTCACGTCTCATTCATCACAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCGCCCGTGTACTGTATCATAACAGAATACATGTCACAAGGGACTCTGAGGATGTATCTAAACAAGAAAGAGCCGTACTCACTCTCAACGGAAACAATACTAAGGTTAGCTCTAGATATATCAAGGGGCATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACCTCAAGTCAAGCAATTTGCTTCTCGATGATGACATGAGGGTTAAGGTGGCGGATTTTGGTACATCTTGTCTTGAAACACGATGCCGGAAAAGCAAAGGGAACTCTGGAACATATCGTTGGATGGCACCGGAGATGGTTAAGGAAAAACCTTATACTCGCAAAGTTGACGTGTACAGTTTTGGTATTGTGCTTTGGGAGCTCACAACTGCTCTACTTCCCTTCCAAGGAATGACACCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCTCTGCCAGCTAGTTGTCAACCAGCACTAGCACGTCTGATAAAGCGATGCTGGTCAGCAAACCCCTCGAAACGGCCAGATTTCAGTGATATTGTGTCTACTTTGGAGAAGTACGATGAGTGTGTGAAAGAGGGCCTAGCACTGAGTCATCATCATTCATCAGGCCTAGTCAGCAGAAATGTTATTATTGAACGCATAAAAGGCTGTGTATCAATGAGCTCCTCCATACCTGTACATGCTTGA	1137	0.4538	MAGSCFHGLRLRMSKSKALPDPSSSSKTQLESDAENVERKRFDSMESWSLIFDSMETWETSKEDQEGEKEEWAADLSQLFIGSKFASGAHSRIYRGIYKQRAVAVKMVKIPSQDEEKKALLEEQFNFEVALLSRLIHHNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSSNLLLDDDMRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALARLIKRCWSANPSKRPDFSDIVSTLEKYDECVKEGLALSHHHSSGLVSRNVIIERIKGCVSMSSSIPVHA*	379

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso15g0955	378	Gene3D	Transferase(Phosphotransferase) domain 1	162	364	-	-
Gso15g0955	378	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	9	366	-	-
Gso15g0955	378	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
Gso15g0955	378	Gene3D	Phosphorylase Kinase; domain 1	68	161	-	-
Gso15g0955	378	SUPERFAMILY	Protein kinase-like (PK-like)	54	333	IPR011009	-
Gso15g0955	378	PRINTS	Tyrosine kinase catalytic domain signature	157	170	IPR001245	GO:0004672\|GO:0006468
Gso15g0955	378	PRINTS	Tyrosine kinase catalytic domain signature	195	213	IPR001245	GO:0004672\|GO:0006468
Gso15g0955	378	PRINTS	Tyrosine kinase catalytic domain signature	241	251	IPR001245	GO:0004672\|GO:0006468
Gso15g0955	378	PRINTS	Tyrosine kinase catalytic domain signature	260	282	IPR001245	GO:0004672\|GO:0006468
Gso15g0955	378	PRINTS	Tyrosine kinase catalytic domain signature	304	326	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g0955	Gso-Chr15	8917481	8923133	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g0955	1	378	MAP Kinase Kinase Kinase	AT1G62400	75.696	0.0	597

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gso15g0955		PK_Tyr_Ser-Thr	8.1e-67	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g0955	-		-	gmx:100806033	751.51

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso15g0955	15	8917481	8923133	Gso9g0073	9	690492	695423	GST
Gso7g2245	7	46075412	46079844	Gso15g0955	15	8917481	8923133	PCT
Gso17g0075	17	745613	750331	Gso15g0955	15	8917481	8923133	PCT

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