Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0948 ATGAGTCAACTCGGTGTGGCGTTGCAGGAATCGCTGCGGACTCAGAGGGAGGCCAGGAGTACCATTCTTGGGTTGTTGAGGGAGCAAATGGACGGTGTAGATGGTGGGACCCGCAGGAGGCGAAGCTTGAAGGAGCGGTTCGGATTCATCGGCATGGGATGTTGTGGGGCCTCCTGGGGATTCCGTTCTGACGCGTTAAGTGTCAACCAGGGAGAGCAAGAACAACAACAGGAAACGGATCCCGGTCGAGTAGCGGCGCCAGAATGTGTGGGCCCCGCGGGTTCGGGTTCGGGTATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCTCAGGGTGCCTCAGGAGGAGGGCGGTGGGGTGAGGGCGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGACGGAGGGAGGGGACGCTGCCACGGCGGAGAAGGAGAAAGAGAAAGAGGAGAATGTTTTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGTGCGGCGTTGATCCCATGTGGACACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTTAATCGAGGCTCTTGTCCCCTTTGCAATCGCTCCATCCTCGAGATTCTCGACATTTTCTAG 630 0.5921 MSQLGVALQESLRTQREARSTILGLLREQMDGVDGGTRRRRSLKERFGFIGMGCCGASWGFRSDALSVNQGEQEQQQETDPGRVAAPECVGPAGSGSGMNLAAALAAERQLRVPQEEGGGVRAPWRVSLMRLLEETEGGDAATAEKEKEKEENVLGNDSVCCVCMGRKKGAALIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0948 209 SUPERFAMILY RING/U-box 151 206 - -
Gso15g0948 209 Pfam Zinc finger, C3HC4 type (RING finger) 158 203 - -
Gso15g0948 209 PANTHER OS01G0917900 PROTEIN 20 209 - -
Gso15g0948 209 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 209 - -
Gso15g0948 209 CDD RING-HC 161 198 - -
Gso15g0948 209 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Gso15g0948 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 209 IPR013083 -
Gso15g0948 209 SMART ring_2 161 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0948 Gso-Chr15 8835833 8836777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0948 1 209 C3H Transcription Factor Family AT4G22250 50.935 3.64e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0948 - - gmx:100804959 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0948 15 8835833 8836777 Gso9g0065 9 607224 608453 GST
Gso7g2240 7 46035888 46037085 Gso15g0948 15 8835833 8836777 PCT
Gso17g0081 17 786404 787532 Gso15g0948 15 8835833 8836777 PCT