Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0943 ATGGAGCGTTTGGCCAGGTCAGCTCGAACGTGGCGTTGGCATTGGCGTTCATTTTCCTCTTTCCAAACCCTAGCTTCTCGCTCCTCACCTCCTTCTTCCTTTCCCAAATTTGCGTCTTCTTGGTCTACCTCTTCCTCTGTTTCGAGTTCCAGAGTTTTGCGCGAGGATTATTCGTTGCTTCCGGTTGTCTTAGCTGGTATATTTGGGACGGGATTCGTGGAAGCTGCATATGCGGATAATGGTGCTGTTGATGTCCAAGAAAGTGCTAAGAAGGAACGTGAGCGAATTGAGGAGTTGCTTAGAAGTAGAGGAATTCGATATGGCTCTTATCCTCGCTTCACTGTTTCCGTTAAAGGCCAAAAGGTCAGTATTAAGTTTCAAATTCCTCCTAATTGTGAAGTTTCACAACTTATCGCAAATCTTACTGCACATCTTGGAACAAAAGCTGAAGGCCATGGTGGTGGTTCAGACATGTTATTACGAGCTTGGGACAGCACCGTTGCTTGGCAACTTACCCTTACTCATCCATCAAAACTAAAACATATTCAAGGGAACAATCTGTCTTCAACAGATATAATTGCAGATGATAGAGATCTATGTATACTCATATTTCATTCTCTCATTGGTTCAGATAAAGCTGAAATTGAATTCATTAAGCAAGGGGACTTGAGTCCTGAAGAGCTTGATGCTTTTGTCTCTGTTTTACAATTAGCTGGTAACAAGTTGGGACAAAGAAACACCCTGGAAAGAAAACCGAGGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATCAAATGATGGTGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGAGTGGTAGAAGATACGATACTATTGGCTTTGCATAGTCCTGAAGTATATGATGATATTGCTCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTCGAGCTGTGCTATTTGAAGGTCCACCAGGTACAGGGAAAACTTCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTATATGTTCCACTTGAGGCAATAATGTCTGAGTTCTACGGTAAAAGTGAACGTCTTTTGGGGAAAGTGTTTTCACTGGCGAACACTCTTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCTCGTGACAATGAAATGCATGAAGCTACACGTAGAATATTGTCAGTCTTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCTGCATTAATCAGTCGGTTTGATAGTATGATCGCCTTTGGCTTACCTGATCATCAGAATCGTCAAGAAATCGCATCCAAATATGCAAAGCACCTGTCCAAACCCGAACTAGATGAACTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATTAGAGATGTTTGTCAGCAAGCCGAACGATCGTGGGCGTCAAAGATAATTCGAGGGCAAGTTCCTAAAGAAGGCGAAAAAGCACAGCTTCCACCTTTGCAAGAATATATAGAATGCGCCACGAGTCGACAGGAGGCGCTGCATAGTGCTGCCGCAAACAGGAAGTTCGCAGGCTCTTTCCGCCGCAGGAATAGGATTTCAAGCGACTAA 1722 0.4309 MERLARSARTWRWHWRSFSSFQTLASRSSPPSSFPKFASSWSTSSSVSSSRVLREDYSLLPVVLAGIFGTGFVEAAYADNGAVDVQESAKKERERIEELLRSRGIRYGSYPRFTVSVKGQKVSIKFQIPPNCEVSQLIANLTAHLGTKAEGHGGGSDMLLRAWDSTVAWQLTLTHPSKLKHIQGNNLSSTDIIADDRDLCILIFHSLIGSDKAEIEFIKQGDLSPEELDAFVSVLQLAGNKLGQRNTLERKPREETEKVPSVDKSISDLEGMGVRIYGLDEPVGISNDGEISWDNIAGYEHQKRVVEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANTLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHQNRQEIASKYAKHLSKPELDELARVTEDMSGRDIRDVCQQAERSWASKIIRGQVPKEGEKAQLPPLQEYIECATSRQEALHSAAANRKFAGSFRRRNRISSD* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0943 573 ProSitePatterns AAA-protein family signature. 440 459 IPR003960 GO:0005524|GO:0016887
Gso15g0943 573 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 65 554 - -
Gso15g0943 573 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 65 554 - -
Gso15g0943 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 516 IPR027417 -
Gso15g0943 573 Gene3D - 290 468 IPR027417 -
Gso15g0943 573 Gene3D - 469 537 - -
Gso15g0943 573 Coils Coil 82 102 - -
Gso15g0943 573 SMART AAA_5 335 470 IPR003593 -
Gso15g0943 573 CDD AAA 332 468 - -
Gso15g0943 573 Pfam ATPase family associated with various cellular activities (AAA) 339 467 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0943 Gso-Chr15 8768308 8777505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0943 335 512 Calmodulin-binding Proteins AT3G56690 38.710 5.54e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0943 - - gmx:100803362 1073.15