Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0941 ATGGAGGGTAGTAGTTGCTCTAATGACACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTAACTTCCCATCATGCAACAAATCCTAGTAATCCTAGTAATAATACTAATAATAATGAAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTTCTGGAACTCCTTCTATCATGCTCCACAACAACAACAACACTGATGATGATAACAACAAAACCAGCACTAACACTGGGTTAGGGTACTATTTCATGGAGAGTGACCACCATCACCGCAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCACCGGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGCGACAATGGCTGGTGATGCAGCAGCAGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACCAAGTATGAGCAAGAACTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAAAGGATTGAGTGCCAGTTCAAAAATCTTACAATTTCTTCCACCGACTTTGCTTGCAACGAGGGTGCTGAGAGGAATGGATCATCTGAAGAGGATGTTGATCTACACAACATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACCTGGGCAGTCTGAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCCGAGTCACAGAAGCTGGCCCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTATTACATGGATAATGTTCTGGGCAATCCATTTCCCATGGATCTCTCCCATCCAATGCTCTAG 1128 0.4566 MEGSSCSNDTSYLLAFGENSGGLCPMTMMPLVTSHHATNPSNPSNNTNNNENTNCLFIPNCSNSSGTPSIMLHNNNNTDDDNNKTSTNTGLGYYFMESDHHHRNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGDAAAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSTDFACNEGAERNGSSEEDVDLHNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0941 375 Pfam ELK domain 257 278 IPR005539 GO:0003677
Gso15g0941 375 PANTHER - 2 364 - -
Gso15g0941 375 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Gso15g0941 375 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Gso15g0941 375 MobiDBLite consensus disorder prediction 98 118 - -
Gso15g0941 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 364 - -
Gso15g0941 375 Pfam KNOX1 domain 118 157 IPR005540 GO:0003677|GO:0005634
Gso15g0941 375 SMART ELK_2 257 278 IPR005539 GO:0003677
Gso15g0941 375 CDD homeodomain 289 341 IPR001356 GO:0003677
Gso15g0941 375 SUPERFAMILY Homeodomain-like 279 355 IPR009057 -
Gso15g0941 375 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Gso15g0941 375 Pfam KNOX2 domain 174 221 IPR005541 GO:0003677|GO:0005634
Gso15g0941 375 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Gso15g0941 375 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Gso15g0941 375 Gene3D - 282 344 - -
Gso15g0941 375 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Gso15g0941 375 SMART HOX_1 279 344 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0941 Gso-Chr15 8741234 8748798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0941 119 375 Homeobox Transcription Factor Family AT1G62360 80.377 3.31e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso15g0941 KNOX2 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0941 - - gmx:100805837 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0941 15 8741234 8748798 Gso9g0058 9 514864 522613 GST
Gso7g2236 7 45988494 45993986 Gso15g0941 15 8741234 8748798 PCT