Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0934 ATGGGGTGTTTGCAATTACCTGATTTTACTTTGTGCACATTCTGCAGAGAACGGTCAAACCAATGTACTGATAACCTTAAATACAAAATCCCAAGACGCCCAAGAGATTTTGAATCTTCAAAGAAGAGAAAGGTTCAAGATACTCACAAACTTGACATTATAAAATCTAAGTCAATGGGGGAAGAAGATATTTTGGTTTGTTCAAAGAGGACTACTGAACTTCCATTTAGGAAAGGACTAGAGGCAAATAAGTGTCTTACTGCATTGAAGAAGAAAAGAATACTTGAAGACGCTATCTTAATTAACAATTTGGAAGATGATAAAGTTTATGTTCCCTCGAAGACATACTCCAGAAGCAAAGCTAGAAAAATGGATGATGTAAAGGTGATTGATACGGCTTCCAGAAGATGTCATCAGTGCATGAAAAAGGAAAGAGCAGCATATGTACCTTGTACTAAATGTCGGAAAATGTATTGTATGTGGTGCATCAGGAAATGGTATTCCAATTTGTCAATAGAAGATATTGCACAAGAGTGTCCCTTTTGCCAAAAGAATTGCAATTGCAATGTTTGCTTGAGTTCAAGAGGAATGATTAAGACGTCAAACAAGTGCATCAGAGATGATGAAAAGGTTCAGTATCTTCAATACACTATTAACCTGCTCCTTCCGTTTATACAACGAGTTTGTGAAGAACAAAGTCAAGAGCTAGAGATTGAAGCTAAAATACAAGGAAAATCAAGATCTGAAATTGAGATATCACAAATTCCTTGTGAAAATGAACGTATCTATTGTGACCATTGTGCTACTTCATTTACTGACCTTTATCGAAGCTGCCCCAAGTGTTCCATTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCCCGGTCTGAACTGAAGTTTCAATATGTGAATAGAGGCTATGATTATATGCATGGTGGTGATCCTTTACCAGTGTCTTGTGATTTAAGGACTTCAAAAGGTCATAGAGAGATATTTACCAAATGGAGTGCTAACAGTGATGGAAGTATTAGATGTGCTCCAAAAGAAATGGGGGGCTGTGGTGGCTCTGTGTTGGAGCTGAAGCGCTTGTTTCCAAATGGATGGATATCAGACTTAGAAGCCAAAGCTCGTAACATGCTAAAAACTTATTGCAAAACTGAACAAGCAACTCTTCAGAAAGAAGCAACATCAAGTTGCAATTCTATGATAAGAGCAGCTTTTAGAGATGGACTGTTTCTCTTCCAAAAACATTGGACTAAAGGTGAACCAATTATAGTTCGTGATGTTCTTAACCAGGGGACAGGTCTGAGTTGGGAGCCAATGGTCACATGGCGAGCACTATGTGAAAATGTGGTTCCAGGGATCAGCTCAAATATGTTAGAAGTGACGGCCATTGATTGCTTGGCTAGTTGCGAGGTAGAAATCAACACTCGTACGTTCTTTAAGGGTTACACACAAGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGATTGGCCCCCCTCTCATAAGTTTGAAGATCTTTTGCCTCGCCATTATGATGAATTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGACCCTCGAGCTGGAATCCTCAACCTTGCTGTAAAGTTGCCACCCCATGTCCTAAAGCCAGACTTGGGTCCAAAAACATATATTGCATATGGCATTAAAGAAGAGCTTGGCAGGGGAGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGCTGTGAATATTTTGACTCACACGGCTGAGGTAACGTTAACTGATGAACAGAACTGTGTTATTTCAAAACTGAAAAAAGCACACATTGCCCAAGATGAGAAAGAGCACTGTGCCCGAGAAAGGGTTGATGAATGCCTGAATGAAGGACCCTGGAAAGACCACAGAGAACAGGAGGATAACAAGTGTCCCGTTGACATCAATGGAAAAATCTTTCCAAATGATATGCCCACAATCTCCAGAGAAACAACAGAAACAGGTGGTGCTCTTTGGGATATCTTTCGGAGAGAGGATACTGATATGTTAGAAGCATATCTAAGGAAACACTCTAAAGAATTTAGGCATACTTATTGTTCTCCAGTTGAACAGGTTGTCCATCCAATTCATGACCAAAGTTTTTACTTGACTTTGGAACACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAGAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTAGCTGCAGACTTCGTGTCCCCAGAAAATGTTCATATGTGCCTGCATTTAACTGAAGAATTCCGTCGTCTTCCCAAGAATCACAAGGCTAGAGAAGACAAACTCGAGATAAAGAAGATGATCGTCTATGCTGTTGACCACGCTGTCAAAGAATTAGAAGCTTTAGTTAGATGTTCTTGA 2478 0.3979 MGCLQLPDFTLCTFCRERSNQCTDNLKYKIPRRPRDFESSKKRKVQDTHKLDIIKSKSMGEEDILVCSKRTTELPFRKGLEANKCLTALKKKRILEDAILINNLEDDKVYVPSKTYSRSKARKMDDVKVIDTASRRCHQCMKKERAAYVPCTKCRKMYCMWCIRKWYSNLSIEDIAQECPFCQKNCNCNVCLSSRGMIKTSNKCIRDDEKVQYLQYTINLLLPFIQRVCEEQSQELEIEAKIQGKSRSEIEISQIPCENERIYCDHCATSFTDLYRSCPKCSIEICLNCCKEIRNGSISPRSELKFQYVNRGYDYMHGGDPLPVSCDLRTSKGHREIFTKWSANSDGSIRCAPKEMGGCGGSVLELKRLFPNGWISDLEAKARNMLKTYCKTEQATLQKEATSSCNSMIRAAFRDGLFLFQKHWTKGEPIIVRDVLNQGTGLSWEPMVTWRALCENVVPGISSNMLEVTAIDCLASCEVEINTRTFFKGYTQGRTYRNLWPEMLKLKDWPPSHKFEDLLPRHYDEFIRCLPFQEYSDPRAGILNLAVKLPPHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLTDEQNCVISKLKKAHIAQDEKEHCARERVDECLNEGPWKDHREQEDNKCPVDINGKIFPNDMPTISRETTETGGALWDIFRREDTDMLEAYLRKHSKEFRHTYCSPVEQVVHPIHDQSFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHMCLHLTEEFRRLPKNHKAREDKLEIKKMIVYAVDHAVKELEALVRCS* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0934 825 ProSiteProfiles JmjC domain profile. 538 788 IPR003347 -
Gso15g0934 825 SMART cupin_9 519 788 IPR003347 -
Gso15g0934 825 ProSiteProfiles Zinc finger RING-type profile. 137 183 IPR001841 -
Gso15g0934 825 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 31 825 - -
Gso15g0934 825 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 31 825 IPR045109 GO:0032454|GO:0033169
Gso15g0934 825 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 134 202 IPR018866 -
Gso15g0934 825 Pfam JmjC domain, hydroxylase 667 771 IPR003347 -
Gso15g0934 825 Gene3D Cupin 402 797 - -
Gso15g0934 825 SUPERFAMILY Clavaminate synthase-like 418 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0934 Gso-Chr15 8677734 8682354 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso15g0934 JmjC 2.7e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0934 K15601 K21989 gmx:100801772 1721.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0934 15 8677734 8682354 Gso15g0934 15 8677734 8682354 ECH
Gso7g2232 7 45955011 45960928 Gso15g0934 15 8677734 8682354 PCT
Gso17g0086 17 857208 862999 Gso15g0934 15 8677734 8682354 PCT