Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0927 ATGGCCACCTCTCCCACACTACTCTTGCTTTCATGCTTCATACTACACCTTGCATATTCAACAGAAAGTGCAGTTCTAAACAAGATAGACTCTTGCTGGCGTGCCAAATCAAATTGGGCATCAAATCGCCAAGCCTTGGCTAATTGTGGAATTGGCTTTGGCAAAGATTCAATTGGTGGCAAGTATGGATCAATATATAAAGTCACAGATCCCTCTGATGACCCCATAAGCCCAAAACCAGGCACACTTCGTTATGGTGTTATCCAAACACAGCCCCTTTGGATCATTTTTGCCAAAGATATGGTTATTAGGCTCGATAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATTCATGATTGCAAACCAAGCAAGGCTGGCCTTGTAAGGAGTACCCCATCTCATCTTGGCCATCGTCGAGGCTCTGATGGGGATGGCATTAGCATATTTGCCTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCTTGATTGATGTTATTCATGCCTCAACTTCCATTACCATTTCTAACAATTACTTTACCCAACATGACAAAGTTATGCTACTAGGACACAGCGACGAATACACAGCAGATAAAAAAATGAAAGTAACAATAGCCTTCAACCGATTTGCTAGTGGTCTGATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGTGGCAGTTCTAACCCAACCATTTTAAGTGAAGGAAACTACTATGTCGCTCCGAATAACCCTGCCACAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAAAATTGGAAATGGAGGTCTTCTAAGGATGCATTCTTAAACGGTGCTTATTTTGTTCCATCTGGGTATGGTAGTTGTGACCCAAATTATTCTCCTACTCAATATTTTACTGCTGTACCTGCTTCCTTGGTGCCCGCAATAACTCTTAATGCAGGTCCCTTGACTTGTGTTGTTGGTAAAGCATGTTAA 1122 0.4162 MATSPTLLLLSCFILHLAYSTESAVLNKIDSCWRAKSNWASNRQALANCGIGFGKDSIGGKYGSIYKVTDPSDDPISPKPGTLRYGVIQTQPLWIIFAKDMVIRLDNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPSHLGHRRGSDGDGISIFASSNIWIDHCFLARCADGLIDVIHASTSITISNNYFTQHDKVMLLGHSDEYTADKKMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYVAPNNPATKQVTKREMKGKLKNWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPTQYFTAVPASLVPAITLNAGPLTCVVGKAC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0927 373 PANTHER PECTATE LYASE 18-RELATED 9 372 IPR045032 GO:0030570
Gso15g0927 373 Gene3D - 26 366 IPR012334 -
Gso15g0927 373 PANTHER PECTATE LYASE 9 372 - -
Gso15g0927 373 SMART amb_all 100 297 IPR002022 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Gso15g0927 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Gso15g0927 373 Pfam Pectate lyase 110 291 IPR002022 -
Gso15g0927 373 SUPERFAMILY Pectin lyase-like 27 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0927 Gso-Chr15 8644708 8646363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0927 18 373 Polysaccharide Lyase AT1G11920 69.188 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0927 K01728 - gmx:100799106 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0927 15 8644708 8646363 Gso15g0927 15 8644708 8646363 ECH
Gso15g0927 15 8644708 8646363 Gso9g0045 9 437256 439123 GST
Gso17g0088 17 886879 889044 Gso15g0927 15 8644708 8646363 PCT