Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0925 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCTCAATCTCTTCCATTATTCCCTTCCAACGATAATAAGATGTTTCCTCTCCTCGGATTCCCCGTCAACCTCAGCCGCGCCTCCAAGGAAGACGATGAAAACCGCAAAGTTGTCGGTGAAGTTGACTTCTTCTCTGATAGAAACAAACCTACACCTCCACCCTCTCACGACCACAACGTTAAACCCAACATCGTCAAGAAGGAAATCGATGAAACACCTCTTCACATTAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTGGATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAGCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGACCGGTAACTACACCGCCTTGCAGATGCATCTTGTCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGGTACCAAGACAGTTCCTTGATATAGGTCCCAGTGGCACAGCAGAAGTAGATGATCAAGTTTCGGATTCTTCTTCTGATGAAAGAACACGATCGAGCACACCTCAGAACCATAACATTGAAGCTGGAGCTAGAGATGGTGCGAGAAATAACAATGGTAAAAGCCAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGAGTCCCAATAAGCTTCAGAAAATGAACCCTTCCAACCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGATGATAGAACCATTTTGGTTACAACATATGAAGGCACGCATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCACTACAGCTGCTGCTAGCATGTTGCTTTCTGGATCAATGTCCAGTGCAGATGGAATAATGAACCCAAATTTGCTAGCTAGAGCAATTCTTCCTTGCTCTACAAGCATGGCAACACTCTCAGCTTCAGCACCATTCCCCACTGTGACTTTGGACCTCACACACAACCCTAACCCATTGCAATTTCAAAGGCCTGGTGCCCCATTCCAAGTACCCTTCCTTCAAGCACAGCCTCAGAACTTTGGGTCAGGAGCCGCCCCAATTGCACAAGCACAAGCACTTTATAATCAATCAAAATTCTCTGGTCTTCAGTTGTCTCAGGATGTAGGATCTTCTCAATTAGCACCACAAGCTCCTAGACCACCCTTACAACCAAGCCAACAGCCCTCACTTGCTGACACAGTCAGCGCCGCCGCCTCCGCCATCACCGCCGATCCAAACTTCACCGCCGTGCTCGCCGCCGCCATCTCCTCCATCATAGGCAGTGCTCATAATTCAAACAACAACAACAGCAACAACAACACAAGCCGGACTACCATTAGCAGCTTTTCAGGAAACTGA 1674 0.4791 MDKGWGLTLDTSSSQSLPLFPSNDNKMFPLLGFPVNLSRASKEDDENRKVVGEVDFFSDRNKPTPPPSHDHNVKPNIVKKEIDETPLHINTGLQLLTANTGSDQSTVDDGVSSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMHLVTLMQQNQQRTGSTENEVVQGKVEDKNVGVGGGKVPRQFLDIGPSGTAEVDDQVSDSSSDERTRSSTPQNHNIEAGARDGARNNNGKSQLGREESPDSESQGWSPNKLQKMNPSNPMDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSTSMATLSASAPFPTVTLDLTHNPNPLQFQRPGAPFQVPFLQAQPQNFGSGAAPIAQAQALYNQSKFSGLQLSQDVGSSQLAPQAPRPPLQPSQQPSLADTVSAAASAITADPNFTAVLAAAISSIIGSAHNSNNNNSNNNTSRTTISSFSGN* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0925 557 Pfam WRKY DNA -binding domain 304 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g0925 557 SUPERFAMILY WRKY DNA-binding domain 295 363 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g0925 557 MobiDBLite consensus disorder prediction 100 121 - -
Gso15g0925 557 MobiDBLite consensus disorder prediction 166 297 - -
Gso15g0925 557 Coils Coil 118 152 - -
Gso15g0925 557 ProSiteProfiles WRKY domain profile. 297 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g0925 557 Gene3D WRKY domain 287 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g0925 557 MobiDBLite consensus disorder prediction 480 501 - -
Gso15g0925 557 SMART WRKY_cls 302 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g0925 557 PANTHER WRKY TRANSCRIPTION FACTOR 6 28 544 - -
Gso15g0925 557 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 544 IPR044810 GO:0003700
Gso15g0925 557 MobiDBLite consensus disorder prediction 242 286 - -
Gso15g0925 557 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0925 Gso-Chr15 8623499 8626084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0925 1 544 WRKY Transcription Factor Family AT1G62300 52.570 5.11e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso15g0925 WRKY 5.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0925 - - gmx:100802124 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0925 15 8623499 8626084 Gso15g0925 15 8623499 8626084 ECH
Gso12g0796 12 8313142 8316672 Gso15g0925 15 8623499 8626084 ECH
Gso15g0925 15 8623499 8626084 Gso9g0044 9 417828 420307 GST