Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0899 ATGATGCAGCAGCCAGGACCCGGCATGGCACCTCCCACCATGGGCCAGCAGCCGCAGCAACAGTACCAGCAGCAGCCTCCGCCGCAGCAGCAACAACCCTACGTCATGATGCCGCCGCAGCATCAGGCGCCGCAGCCTATGTGGGCCCCATCCGCCCAGCCTCCGCTGCCGCAGCAGCCTGCTAGCGCCGACGAGGTCCGAACCCTCTGGATCGGGGATCTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGCTTTGCTCATACCGGCGAGGTTTCGTCAGTTAAAGTGATTCGGAACAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTAATAGTCGTGCTGGAGCTGAGAGAATTCTCCAAACATATAATGGGGCTATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCCGGTGAGAGGTCGCGTCAAGATGATTCTCCTGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTATCTTCTTCAGGAGACATTCAGGGCTCGTTACAACTCGGTGAAGGGTGCAAAAGTTGTCATTGATAGGCTAACTGGCCGTACCAAGGGGTATGGCTTTGTAAGGTTTTCAGAAGAGAGTGAGCAAATGAGAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGGATTGGACCAGCCTCTAATAAAACCCCTGCCACTCAGTCCCAGCCAAAAGCTTCATATCTGAATTCTCAACCTCAAGGCTCACAGAATGAGAATGATCCAAATAATACGACTATTTTTGTTGGCAATTTGGATCCTAATGTAACCGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCTGAAGAGGCCCTTCGGGTGTTGAATGGGACGCTGTTGGGTGGACAAAATGTGCGTCTTTCATGGGGTCGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGCTGCTGGTGCTGGTTCTGGTGGTGGATATTATGGGTATGCTGCTCAAGGATATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGATATCCTGGTTACCAAGCTCCTCAACAACAGCAGCAAATAGGATATAGTTGA 1236 0.4984 MMQQPGPGMAPPTMGQQPQQQYQQQPPPQQQQPYVMMPPQHQAPQPMWAPSAQPPLPQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGAAGAGSGGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYPGYQAPQQQQQIGYS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0899 411 MobiDBLite consensus disorder prediction 235 272 - -
Gso15g0899 411 MobiDBLite consensus disorder prediction 232 272 - -
Gso15g0899 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 335 IPR000504 GO:0003723
Gso15g0899 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Gso15g0899 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Gso15g0899 411 Gene3D - 10 150 IPR012677 -
Gso15g0899 411 MobiDBLite consensus disorder prediction 31 57 - -
Gso15g0899 411 CDD RRM2_SECp43_like 160 239 - -
Gso15g0899 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Gso15g0899 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Gso15g0899 411 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 16 408 - -
Gso15g0899 411 MobiDBLite consensus disorder prediction 1 60 - -
Gso15g0899 411 MobiDBLite consensus disorder prediction 13 30 - -
Gso15g0899 411 Gene3D - 151 248 IPR012677 -
Gso15g0899 411 SMART rrm1_1 271 338 IPR000504 GO:0003723
Gso15g0899 411 SMART rrm1_1 68 143 IPR000504 GO:0003723
Gso15g0899 411 SMART rrm1_1 162 236 IPR000504 GO:0003723
Gso15g0899 411 MobiDBLite consensus disorder prediction 391 411 - -
Gso15g0899 411 CDD RRM1_SECp43_like 68 148 - -
Gso15g0899 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Gso15g0899 411 SUPERFAMILY RNA-binding domain, RBD 66 241 IPR035979 GO:0003676
Gso15g0899 411 Gene3D - 249 381 IPR012677 -
Gso15g0899 411 CDD RRM3_NGR1_NAM8_like 269 340 - -
Gso15g0899 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 408 - -
Gso15g0899 411 SUPERFAMILY RNA-binding domain, RBD 256 369 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0899 Gso-Chr15 8350397 8354709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0899 66 349 Eukaryotic Initiation Factors Gene Family AT2G23350 28.179 5.06e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0899 - - gmx:100794675 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0899 15 8350397 8354709 Gso11g2357 11 39577899 39582211 GST
Gso7g2199 7 45704413 45708297 Gso15g0899 15 8350397 8354709 PCT
Gso17g0118 17 1094612 1098743 Gso15g0899 15 8350397 8354709 PCT