Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0890 ATGGCAAATTTCACCTCTTCTTCTTCGTCTCTGACACACATTCCACCCATTTCAGCTCCTTCTTCTGTAGCTTTCGACGATTCTTCTGAAGACTCCTGCAGTATATGCCTAGAGCCCTTCACCTTTTATAACCCATCTGATGTTACCTGTTGCAAACATGAATACCATCTGCCGTGTATTATTGAATGGTCAAAAAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTCTGAAAGACCCTGACTGCCAAGAGCTTCTAGCTGCTGTGGAAGCTCAGAAACGTATGATATTAAGAAACTTGGCTAATTCTCGTGCCCCCCTTGGACAGCTTAATGATGGCCATGATTTTTGCTCAGATGACCCTGATTATGACCAGATTATGAGGCGCCTAGATTCTGCCGTAAAAAGAGTTCGTTATGTTCCGGGACAGGAAAGGAAGAGATCACCTGGTGCTGGTACATCCAAGGTTCTTGGTAACTCTTCCATGCATGTTTCTGGGCTGCAAACAACACTTACAACTTCACCATCTGGGGGTAGTTCACCAGCTTCTGGTGTTCCATCTACTGTTAGCATTCAACCTCCAGCATTAAATACTAATCCTGATAGTGCAAGGAGACCAAACACTTCTGATATGTTTTCCTTCCCCAAGTCCTTCAAATCCAAATTTTCTTCTGCTTCAGCCAGATATAAGGAATCAATTTCAAAAGGTACACGCGACCTTAAAGAAAAGTTACTTGCTCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATTGCTGGAGTTGTGCGGATGATTGAACGCCTTGATCTTAGCTCAAAACGGTCAAGTTCTCCTCTCATTGCTGTCCATAGCGGGGCCACTTCAGACTTCCCTTCTTCAAGGAAGCCTGTTGAAGAGAATGGCATTGGGGGTTCTCCTAGTAAAGAGAGTGGAGGTGCAGTTCATGATGTTAGTTCAGATGTTCTCCCACTTGTTACTAACATGCAATCTTTTCAAACGGAAACTCCTCCATTTGTTCAGAGTGGACATGGTAAGCTATGA 1071 0.4398 MANFTSSSSSLTHIPPISAPSSVAFDDSSEDSCSICLEPFTFYNPSDVTCCKHEYHLPCIIEWSKRSKECPICWQSLALKDPDCQELLAAVEAQKRMILRNLANSRAPLGQLNDGHDFCSDDPDYDQIMRRLDSAVKRVRYVPGQERKRSPGAGTSKVLGNSSMHVSGLQTTLTTSPSGGSSPASGVPSTVSIQPPALNTNPDSARRPNTSDMFSFPKSFKSKFSSASARYKESISKGTRDLKEKLLAHNVSVKELSKGVQREMNAGIAGVVRMIERLDLSSKRSSSPLIAVHSGATSDFPSSRKPVEENGIGGSPSKESGGAVHDVSSDVLPLVTNMQSFQTETPPFVQSGHGKL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0890 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 105 IPR013083 -
Gso15g0890 356 MobiDBLite consensus disorder prediction 155 216 - -
Gso15g0890 356 Pfam Ring finger domain 31 73 IPR001841 -
Gso15g0890 356 MobiDBLite consensus disorder prediction 142 216 - -
Gso15g0890 356 MobiDBLite consensus disorder prediction 293 328 - -
Gso15g0890 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 328 - -
Gso15g0890 356 SMART ring_2 33 73 IPR001841 -
Gso15g0890 356 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Gso15g0890 356 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 328 - -
Gso15g0890 356 SUPERFAMILY RING/U-box 25 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0890 Gso-Chr15 8264485 8267595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0890 4 81 C3H Transcription Factor Family AT5G38895 35.897 4.07e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0890 K19043 - gmx:100790134 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0890 15 8264485 8267595 Gso11g2367 11 39653551 39656617 GST