Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0881 ATGTCTCACATAGCCGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCTTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGTGTTATAGAATTCATCAAGGAGCTACACCAAGTTCTTCAAGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTGAGCCCTAGCCCTGGCCCGAGCCCACGAACACTTCAGCCAATGTTTCATCAACTTGATAGCCCCTCCATGATTGGGACCAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTCCTGTTGCGGATGTTGAAGTGAAAATCTCGGGTTCATATGTGATCTTGAAAGTCATTTGCCACAGAATTCCAGGTCAAGTTGCAAAGATCATAACTGTTTTGGAGAGTCTTTCGTTTGAAGTTCTTCATCTGAATATCAGCAGCATGGAGGAGACTGTCCTTTACCAATTTGTTGTCAAGATAGAGCTGGGATGCCAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTTAGATGCTATAATTGCGCTGTGA 576 0.4323 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPMFHQLDSPSMIGTNSFKELGASCNSPVADVEVKISGSYVILKVICHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCLDAIIAL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0881 191 SMART finulus 4 55 IPR011598 GO:0046983
Gso15g0881 191 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
Gso15g0881 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Gso15g0881 191 Coils Coil 191 191 - -
Gso15g0881 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Gso15g0881 191 Gene3D - 1 64 IPR036638 GO:0046983
Gso15g0881 191 CDD bHLH_AtFAMA_like 1 63 - -
Gso15g0881 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 69 IPR036638 GO:0046983
Gso15g0881 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
Gso15g0881 191 SUPERFAMILY ACT-like 114 174 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0881 Gso-Chr15 8172444 8174515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0881 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.366 4.38e-86 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0881 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0881 - - gmx:100785890 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0881 15 8172444 8174515 Gso11g2382 11 39794865 39796869 GST