Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso15g0879 | ATGGGTATCTCGTGGAGTGGCAACAGCAGAAGAAGAAACAATTACCTCCAAAACCGACCACCACCCCCTTCTTACTACTACCCTCCTGAATCCCACCCTCCTCCTCCGCCACCGCCACCACCACCACCGCAGTCTCAAGGCTACTTTCTCCCTTCAACAACCCCCTACGCCCCTCCCCCTCCCTTGCCTCCACCACCAGGTCCTCCCCAAAGCCACTCAATTTCGTTCTATTACAACTCCAACCCCAATTCCTACGGCACTCCCACTCTCGCCCCTCGATTTCACTACCAGCATTACTACCAGCCCCATCCCTCCGCGTGTCCCGCCCCTCGTCCCGCCTCCACCACTCCTCCGCCCTACGTCGACCACCAGACCGCCAAGAAGATAAGGAACTATGTCAATGTCCACAAAGACACCCTGCGCCTCGAGGTCGACGACCACAACCCCGATCACCATCTTCTTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTATCTTATACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTATATCCTGATGCATTTCAGCCGGTCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCTGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCCGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACAAGTTTGAAAACTACCTCAGAAGATGAAACTCCTGGTGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGTATCTTAGAGAAAAGTAATGGTGCTGGTCCATTCCTAATAAAAGTAGTTAAGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAACTCATCCACAGATGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAATGCTCTTCGACAACAATCCAATAAATGCCCTATATGCCGGCAGCCTATTGAGGAACTTATAGAGATCAAGGTGAACAATGGTGATCAATGA | 1122 | 0.4804 | MGISWSGNSRRRNNYLQNRPPPPSYYYPPESHPPPPPPPPPPPQSQGYFLPSTTPYAPPPPLPPPPGPPQSHSISFYYNSNPNSYGTPTLAPRFHYQHYYQPHPSACPAPRPASTTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDDHNPDHHLLSFVFDAVYDGSITILYFAKEEEKCRFVPLYPDAFQPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTTSEDETPGDSLLDASPHMQITQGILEKSNGAGPFLIKVVKQILWIDGVRYELRELYGIGNSSTDDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANALRQQSNKCPICRQPIEELIEIKVNNGDQ* | 374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso15g0879 | 373 | MobiDBLite | consensus disorder prediction | 21 | 71 | - | - | |
| Gso15g0879 | 373 | ProSiteProfiles | Zinc finger RING-type profile. | 318 | 357 | IPR001841 | - | |
| Gso15g0879 | 373 | SMART | ring_2 | 318 | 356 | IPR001841 | - | |
| Gso15g0879 | 373 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Gso15g0879 | 373 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 317 | 357 | IPR045195 | - | |
| Gso15g0879 | 373 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| Gso15g0879 | 373 | PANTHER | MAHOGUNIN | 1 | 372 | IPR045194 | GO:0061630 | |
| Gso15g0879 | 373 | Pfam | Zinc finger, C3HC4 type (RING finger) | 316 | 362 | - | - | |
| Gso15g0879 | 373 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 372 | - | - | |
| Gso15g0879 | 373 | SUPERFAMILY | RING/U-box | 317 | 363 | - | - | |
| Gso15g0879 | 373 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 367 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso15g0879 | Gso-Chr15 | 8136109 | 8140229 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso15g0879 | 120 | 373 | C3H Transcription Factor Family | AT3G06140 | 62.745 | 9.76e-110 | 323 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso15g0879 | - | - | gmx:100786054 | 671.389 |