Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0874 ATGAACATCTCAACATCAGCCTGCGCCTGCGCCTGCGCCTGCAAACAGGAGCTGCCCCTAGTAAGCTTCCAAAAGGGATCACTTATGATGGAGTCGTTGTTTCATCATCGGAATAACAGCAACAAGGATAAGGTAGTGGTGATAATGGGGGCCACTGGTGCCGGCAAGACGAAGTTGGCTATAGACGTGGCCAAACACTTCCAACCAGCGGAGATAGTGAACTCAGACAAAATGCAAGTGTACAAGGGCCTAGACATCACCACCAATAAGGTCACTGAAGAAGAGTGTGGCGGGGTCCCACATCATCTGCTTGGCACTGTTGACCCATATATAAATTTCAGCGCCAACGACTTCTGTCGCTACGCCACTTTGGCCATCGACTCCATTGTAGAAAAAAATGGCTTACCCATCATCGCTGGAGGCTCTAATTCTTATTTAGACGCGTTGGTCAATCATTATCCTGAGTTTAGGTTAAGGTACCAGTGCTGTTTCCTCTGGGTCGACGTGGCACTCCCCGTTCTCCATTCCTCCCTCCAGGCACGTGTGGACCGCATGATCGAAGCCGGTCAAGTCAACGAGGTTCGTGACTTCTTCGACCCGAGCGTAACCGATTACACCAAAGGGATACGAAGGGCTATTGGGGTGCCCGAATTCGACGATTTTCTTCGCGCAGAGGCGAATGGGCGGCTAGATGAGAGAACAAAACAGAGGCTTCTTCAGGCTGCCATTGCAAGGTTGAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAGAAGATCCACCGCCTGCACGCCTTCTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCGCGGCTCACGTGACGCCTGGCGCGATCACGTGCTCGCCAAGACCTTGATCATCCTCCACAAGTTTCTCTACGGAGAGAAGAAAACGCCGCACGTTGTCCCCGCCGGAATCGTCTCCGCCAAAGACGTAATTGCGGCGGCGGCGGTGCTTTCTTCGCCGCCGGTAGCAATGGCAGCAACGCGGTAG 1029 0.5364 MNISTSACACACACKQELPLVSFQKGSLMMESLFHHRNNSNKDKVVVIMGATGAGKTKLAIDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECGGVPHHLLGTVDPYINFSANDFCRYATLAIDSIVEKNGLPIIAGGSNSYLDALVNHYPEFRLRYQCCFLWVDVALPVLHSSLQARVDRMIEAGQVNEVRDFFDPSVTDYTKGIRRAIGVPEFDDFLRAEANGRLDERTKQRLLQAAIARLKINNCTLANRQIQKIHRLHAFWKRNMHRLDATEVFRGSRDAWRDHVLAKTLIILHKFLYGEKKTPHVVPAGIVSAKDVIAAAAVLSSPPVAMAATR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0874 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 205 IPR027417 -
Gso15g0874 342 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 36 309 IPR039657 -
Gso15g0874 342 Gene3D - 42 304 IPR027417 -
Gso15g0874 342 Pfam IPP transferase 158 259 - -
Gso15g0874 342 Pfam IPP transferase 79 155 - -
Gso15g0874 342 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 36 309 - -
Gso15g0874 342 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 171 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0874 Gso-Chr15 8083251 8085423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0874 159 324 C2H2 Transcription Factor Family AT2G27760 30.729 1.44e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0874 K10760 - gmx:547754 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0874 15 8083251 8085423 Gso11g2389 11 39901250 39903214 GST
Gso7g2171 7 45471455 45473481 Gso15g0874 15 8083251 8085423 PCT
Gso17g0140 17 1303137 1305119 Gso15g0874 15 8083251 8085423 PCT
Gso15g0874 15 8083251 8085423 Gso7g2171 7 45471455 45473481 PCT
Gso15g0874 15 8083251 8085423 Gso17g0140 17 1303137 1305119 PCT