Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0848 ATGGCATCATTGGTAGCCAGTGGTAGCAGTCAAATGGCTCCGTCAGTTTCTGTCCAAGAAAAAGGGAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGTGAACCAAATAAGATTATTCCTTTACCTCAACATGAAAGCCTCAGCTATGAGTTTTCTGCTGAAAAGTTTGAAATAACCCCAGGTCATGGACAAGTTAGTGCTTCTGGCATGTGCAGTGTAAGCCAAGATCATTCTGATGCGTTGAAGCTTGACCTTGGATTGTCTAGTCCTGTAGCTTCATCTGATGTCAGGATTAGCCAACCAAAGGAGGAACTTGAGGTAGATGAATTCCATGATGCCGATTGGAGTGATCTCACTGAAGCCCAATTGGAAGAACTTGTTCTGAGCAATTTGGACACCATTTTCAAGAGTGCAATTAAAAAAATTGTTGCGTGTGGCTACATTGAAGACGTTGCTACAAAGGCCATCTTAAGGTCTGGCATTTGTTATGGATGTAAAGATGCTGTGTCTAATGTAGTTGACAATGGTTTAGCATTTCTTAGAAATGGCCAAGAGATTAATCCTTCACGAGAGCATTATTTTGAAGATTTAGTGCAACTAGAGAAGTATATTTTGGCTGAATTGGTCTGTGTTCTTCGAGAGGTTAGGCCATTGTTCAGTACCGGGGATGCAATGTGGCGTTTGCTAATTTGTGACATGAACGTGTCACTTGCTTGTGCAATGGATGGTGACCCTTCAAGCAGTTTAGGTAGTGATGGCATTGCTGATGGCTGTTCTTCTGTTCAGACTGAATCACAGTCAAAATTAGAAACAAAAGGTCCTGAATTGAGTCTTCCAAGTCCTTGTAAATCAGTCTCCTCAGGTTCTCAACCTAAGAAATCCTCTGTGGAAGGAAATACTGGTTTGGACAAGTCAAAGAATTCTCAAATTCTTGTTGGACCATCGGAGAAAGAGGCTGCAAATTCTGGACGTGATTCTATTGATAAATCATCTAGTACTTCTGGGACATCTCAATCTCCTTTGGTGGAAGAAAAGTGTGGAAATATTAGAAAGGTCCATTCCAGTAGCACTAAGAGAGACTACATTCTTCGACAAAAGTCATTCCACATGGAAAAAGGCTATCGAACATATGGGTCTAAAGGGTCTTCAAGAGGAGGAAGACTGAATGGTTTAAATGGATTAATCTTGGATAAAAAACTTAAATCTGTATCTGAGCCTACTACCATAAACTTAAAGAGTGCATCCATAAACATAAGTAAGGCAATGGGAGTTGATGTGACACAAGACAATTTAAATGCTGATTTTTCATCTAATGATGGACCATCAACCCCCACTGCATTTAGTCTGGATTCTACTGTTACTGTTTCTCGGTCAACCAACACTTTATCTTCAGTGCACGATGGAAATATACCTGCAGTTGGTAGCTCAAACGTATTATCAGCTACAGATACTAATCTTTCTCTTTCTTTGTCTTCAAATAGTAAGTCTCCTACAACACCTGTCTGCTGCAATAATAAGCCACCTAATAGTAGTTGTATGGGGATACTGCATGACAGGTCCCTGGGGAAGTGGATACCCCAAGATAGAAAGGATGAGATGATTTTGAAGCTAGTTCCAAGGGTTCAGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCAGCTCGTCGGCTGTGTAAGGATAAGGCTGAGCTTAAGACATTGAGACAAGAGAAAGATGAAGTTGAACGTCTTAAAAAAGAAAAACAATCTCTAGAGGAAAACACTATGAAGAAGATTTCTGAGATGGAAAATGCCTTGTCTAAAGCAAGTGCACAGGTAGAACGAACCAATGCTGATGTCCGGAAATTTGAGGTGGAAAATGCTGCACTGAGGAAAGAGATGGAGGCTGCTAAGTTACGAGCGGCAGAATCAGCCACAAGCTATCAAGAGGTCTCAAGGAGGGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAAGCAGAAATCCTTGTTTCAGGAAGAGCTAATGACTGAAAAACACAAATTGGCTCAGTTGCAGCAAGAATTAGAGCAAGCTAAAGTGCAACAGCAGCAAGTTGAGGCTAGGTGGCAGCAGGCAGCAAAGGCAAAAGAAGAACTCCTCCTGCAGGCCAGTTCTATAAGAAAAGAAAGGGAACAAATTGAGGAGTCAGCAAAATCAAAGGAGGACATGATCAAACTAAAAGCAGAGGAGAATCTGCACAGGTACAGAAATGGCATCCAGAAACTTGAAAAGGAAATTGTGCAACTGAGGCAGAAGACCGACTCTTCCAAAATTGCTGCACTGAGAAGGGGAATTGATGGAAACTATGCCAGCAGCTGTATGGACATGAAAGGCACGGCTCTGAGAGAATCGCAGGCCACTTTTATCTCAGAACTGGTTTCAAATTTAAATGACTGCTCTTTGATAGGGGGTGTAAAACGGGAAAGAGAATGTGTCATGTGCCTTTCTGCGGAGATGTCTGTTGTATTCCTCCCATGTGCTCATCAGGTAGTTTGCACAACATGCAATGAGCTCCATGAGAAACAAGGAATGCAAGACTGTCCTTCTTGCAGGAGCCCCATCCAGAGGCGTATTTTTGTTCGTTTTGCCCGTACATAA 2658 0.4202 MASLVASGSSQMAPSVSVQEKGSRNKRKFRADPPLGEPNKIIPLPQHESLSYEFSAEKFEITPGHGQVSASGMCSVSQDHSDALKLDLGLSSPVASSDVRISQPKEELEVDEFHDADWSDLTEAQLEELVLSNLDTIFKSAIKKIVACGYIEDVATKAILRSGICYGCKDAVSNVVDNGLAFLRNGQEINPSREHYFEDLVQLEKYILAELVCVLREVRPLFSTGDAMWRLLICDMNVSLACAMDGDPSSSLGSDGIADGCSSVQTESQSKLETKGPELSLPSPCKSVSSGSQPKKSSVEGNTGLDKSKNSQILVGPSEKEAANSGRDSIDKSSSTSGTSQSPLVEEKCGNIRKVHSSSTKRDYILRQKSFHMEKGYRTYGSKGSSRGGRLNGLNGLILDKKLKSVSEPTTINLKSASINISKAMGVDVTQDNLNADFSSNDGPSTPTAFSLDSTVTVSRSTNTLSSVHDGNIPAVGSSNVLSATDTNLSLSLSSNSKSPTTPVCCNNKPPNSSCMGILHDRSLGKWIPQDRKDEMILKLVPRVQELQNQLQEWTEWANQKVMQAARRLCKDKAELKTLRQEKDEVERLKKEKQSLEENTMKKISEMENALSKASAQVERTNADVRKFEVENAALRKEMEAAKLRAAESATSYQEVSRREKKTQMKFQSWEKQKSLFQEELMTEKHKLAQLQQELEQAKVQQQQVEARWQQAAKAKEELLLQASSIRKEREQIEESAKSKEDMIKLKAEENLHRYRNGIQKLEKEIVQLRQKTDSSKIAALRRGIDGNYASSCMDMKGTALRESQATFISELVSNLNDCSLIGGVKRERECVMCLSAEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQRRIFVRFART* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0848 885 Coils Coil 716 743 - -
Gso15g0848 885 PANTHER OS05G0141500 PROTEIN 4 884 - -
Gso15g0848 885 MobiDBLite consensus disorder prediction 1 20 - -
Gso15g0848 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 822 881 IPR013083 -
Gso15g0848 885 MobiDBLite consensus disorder prediction 328 346 - -
Gso15g0848 885 Pfam Family of unknown function (DUF6592) 133 244 IPR046527 -
Gso15g0848 885 Coils Coil 674 708 - -
Gso15g0848 885 MobiDBLite consensus disorder prediction 1 43 - -
Gso15g0848 885 Coils Coil 572 645 - -
Gso15g0848 885 MobiDBLite consensus disorder prediction 263 348 - -
Gso15g0848 885 Pfam Zinc finger, C3HC4 type (RING finger) 828 876 - -
Gso15g0848 885 Coils Coil 745 779 - -
Gso15g0848 885 ProSiteProfiles Zinc finger RING-type profile. 831 871 IPR001841 -
Gso15g0848 885 MobiDBLite consensus disorder prediction 283 318 - -
Gso15g0848 885 PANTHER OS05G0141500 PROTEIN 4 884 IPR046934 -
Gso15g0848 885 SUPERFAMILY RING/U-box 826 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0848 Gso-Chr15 7806615 7810880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0848 - - gmx:100777140 1610.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0848 15 7806615 7810880 Gso11g2416 11 40186177 40190464 GST
Gso7g2148 7 45282679 45287665 Gso15g0848 15 7806615 7810880 PCT
Gso17g0161 17 1512679 1517134 Gso15g0848 15 7806615 7810880 PCT
Gso15g0848 15 7806615 7810880 Gso7g2148 7 45282679 45287665 PCT
Gso15g0848 15 7806615 7810880 Gso17g0161 17 1512679 1517134 PCT