Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0840 ATGGAACCCCAATCTCTCCCTCCTCCTCCCACCATGGACGACGCCCAAGACCCTTCCTCAATTTGGGACTTCTCTTACCTCCTCGACTTCAACCTCGACGACCAAGATGGTATTTTTACTAGCAGTAACTCTCTCCCTCTTCCCTTAAACGACGACGACGACGCCGCCGCTCCCGAGATTTCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGATGACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCGAAACTCGAGGACGAGGGTTTGCCCGTCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCGTCCGCACGCTGCCAGGTCCCTGGCTGCGAAGCCGATATCTCAGAGCTCAAGGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGACGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAAGGTAAACGGAGCTGCAGAAGGAAGTTGGAGCGGCATAATACCAGAAGGAGAAGAAAGCCTCCGGCGGATTCTGGAGGTGCTGCTCATAGTGAACTACTTCAACCTGTTGCTCAAAATGAGGAACACAATTATCATGTGGAAGCTGGAAAAGATTGTTCAAATTTGAGTACCGATGTCAATGACGTAGGAGTGTCTCCAGATCATGAAGATGAACCGGTCTCCATTCCCAGCTTGGCTCCAGATCATGAAGATGAACCGGTCTCCATTCCCAGCTTGGCTCCCGAAGCACAGAATATTAATAGTGACAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAATGCGGGTGAATAGTGGGAACACTTCTAATTCACCTTCGTATTGCAACAATAAGAATGCCTATTCGTCTGTGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAATATGCCTGTAGAGTTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGTGGATAACTTTATTGAAAGACTCTTTGGAGTATGTGCACGATTTTGTTGCTCCTGGAAAGATGCTGTCTGGAAGAGGCACCGCATTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACAAAAGTTGAAGTTAACATGCTGGCACCGAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCATCTCCACATAGCTGGACTGAAGACAATATTTCGTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTCATTCCTGTACTCATTGGGGACAAAGAAATTTGTACTGAAATGAAGACACTGCAGCAAAAATTAGATGTTTCTCTCCTTTCTAAACAATTCCAGTCTGCATCTGGTGGTTCTATCTGCAGCTCATGTGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTCCTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGATTTTCTGATATGCAATGATTCAACAATTATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAGAGCGTGGAATCCAACAATGTTGTAATTAATAGGACAAGTGATGTTGACATAACGCAACTCCTGAATCACATACATAATGCTAGTAATGTCATATGTCAGAAACATCAGCAAAGTAGAAGTATAATTGTGCACTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTTCTAATGACAAAACGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGCGTGGAAGAGTTGCCTGAAAGATATGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTCTCGACCAGCTATTTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCGGTTAGAAGGTGCTTGTTTAACTATTAG 2376 0.4491 MEPQSLPPPPTMDDAQDPSSIWDFSYLLDFNLDDQDGIFTSSNSLPLPLNDDDDAAAPEISQNDRVRKRDPRMTCSNFLAGRVPCACPELDAKLEDEGLPVKKRARTARASASARCQVPGCEADISELKGYHRRHRVCLRCANAATVMLNDEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPADSGGAAHSELLQPVAQNEEHNYHVEAGKDCSNLSTDVNDVGVSPDHEDEPVSIPSLAPDHEDEPVSIPSLAPEAQNINSDSVVSLAVSGEMRVNSGNTSNSPSYCNNKNAYSSVCQTGRISFKLYDWNPAEFPRRLRHQIFQWLANMPVELEGYIRPGCTILTVFIAMPNIMWITLLKDSLEYVHDFVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTKVEVNMLAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDVSLLSKQFQSASGGSICSSCETFALSHTSSSDFLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTESVESNNVVINRTSDVDITQLLNHIHNASNVICQKHQQSRSIIVHSEMEGFKLAQGCSQDNMLSVAINSQGILSRTDEKWGVLKSPTSNDKTERIPLLKRDIIMSVEELPERYGRRCLGRGFLTSRPAIFVIVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0840 791 ProSiteProfiles Zinc finger SBP-type profile. 113 190 IPR004333 GO:0003677
Gso15g0840 791 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 789 IPR044817 GO:0003677
Gso15g0840 791 MobiDBLite consensus disorder prediction 43 68 - -
Gso15g0840 791 Pfam SBP domain 116 190 IPR004333 GO:0003677
Gso15g0840 791 SUPERFAMILY SBT domain 114 192 IPR036893 GO:0003677|GO:0005634
Gso15g0840 791 MobiDBLite consensus disorder prediction 226 257 - -
Gso15g0840 791 MobiDBLite consensus disorder prediction 234 249 - -
Gso15g0840 791 MobiDBLite consensus disorder prediction 180 199 - -
Gso15g0840 791 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 789 - -
Gso15g0840 791 Gene3D - 111 177 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0840 Gso-Chr15 7719392 7727381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0840 6 785 SBP-box Gene Family AT5G18830 47.109 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso15g0840 SBP 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0840 - - gmx:100819905 1572.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0840 15 7719392 7727381 Gso11g2428 11 40291080 40298136 GST