Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0838 ATGCAAGCACCTCAAGCTGCATCAGCCACTGATGAAGCTCCTGAGATTTCCCATCAGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGACAGTGGACCCGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTATAGGGTTTGGTAGCACTAGTAGTGGAAGGGTTCTGGACCATTGTCAAAGTTTCGGTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTGAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGTTCCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACGGACCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCTCATAAAGATGTTGACCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGGCGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGCGAACAGGAGCAACAAGATTCAAATGATGATCAAATAACTCCTGTGCAAGTAGAAGTTACTGCCGATGAAGAAATCCCCGAAGAGGAAGCGGTGTGCAGGATATGTTTTGATGTATGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCACAAAAGGAGATAAGGAATGTGATGTATGCAGGCAAGAGGTTCAGAATTTGCCTGTAACTTTGCTTCGTGTGACTAGCTCTGTTAGACAAAACAGACAGCTGCAAGGTCAGCATAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTAAAGACTCAAGCAATTATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCACTTGTGGCTTTAACTGTGCATCTATTTTATACTATGTTGCATTTGACAGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGGCATCAACTACGCATATATTCAGTTTGTCACTTGGAGACTTCAGGTTTCTCATGATGATAACCCAGTATGA 1269 0.4247 MQAPQAASATDEAPEISHQAVPQRNKEVSDSGPGGRRPDISLQVPPRPIGFGSTSSGRVLDHCQSFGKGISSSRGFLRALSLKRKGNVADGERSSLLNSDPKTAADGPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDSNDDQITPVQVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKGDKECDVCRQEVQNLPVTLLRVTSSVRQNRQLQGQHNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGIAMGINYAYIQFVTWRLQVSHDDNPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0838 422 MobiDBLite consensus disorder prediction 1 57 - -
Gso15g0838 422 ProSiteProfiles Zinc finger RING-type profile. 215 262 IPR001841 -
Gso15g0838 422 PANTHER ZINC FINGER PROTEIN 3 422 - -
Gso15g0838 422 MobiDBLite consensus disorder prediction 87 108 - -
Gso15g0838 422 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Gso15g0838 422 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Gso15g0838 422 CDD RING_CH-C4HC3_MARCH 215 262 - -
Gso15g0838 422 MobiDBLite consensus disorder prediction 128 163 - -
Gso15g0838 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 270 IPR013083 -
Gso15g0838 422 MobiDBLite consensus disorder prediction 128 146 - -
Gso15g0838 422 SUPERFAMILY RING/U-box 211 265 - -
Gso15g0838 422 PANTHER OS02G0165000 PROTEIN 3 422 - -
Gso15g0838 422 SMART ringv_2 214 262 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0838 Gso-Chr15 7696854 7702073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0838 153 321 C3H Transcription Factor Family AT2G37950 26.776 3.57e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0838 - - gmx:100527094 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0838 15 7696854 7702073 Gso11g2430 11 40328750 40334609 GST