Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0829 ATGTGCCTAATCAGAAGCATGAGATCGCAGTCGCAGCGTGTGGTGCAGGAACAAGAAGAAGCAGAGTGTGTCGGCGACAGCATGCGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCTTCAGAATCGAGGCCTCCGAGGACGCGTGGCCGCCGCGGAAGAGCGTTGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCATAGACATTGTCAAAACACCCGAACTCTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTACGATGCTTTATAAAGCGCAACCGTTCCAGCCAAACATACTATTTGTATCTCAGTTTAACCAATACACTAGCTGAAGATGGGAAGTTCCTTCTTGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGAGCAAAGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAGCAAGTTTCACCCAAGGTCCCTACAGGAAACTATCCAGTGGCCCATATTTCATATGAATTGAATGTGCTTGGCTCAAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCGCTGCAATTGAACCTGGAGGTGTAGCTCCTGTACAGACTGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCCCCTTTTTTCGATCAAAATCAAATCGTGTGGAAAATTCCGTGTCTGGACCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTGAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAACAGACCTGCTGGACCAGAACATGATAAGATCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTTCCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGTTTTGATACCAAGATTGCTTGTGAATGA 1158 0.4706 MCLIRSMRSQSQRVVQEQEEAECVGDSMRQSCWANMPQELLREVLFRIEASEDAWPPRKSVVACAGVCRSWRQITIDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSSQTYYLYLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPVQTEFSLNNIDMFPSFPFFRSKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENRPAGPEHDKIILQFGKVGKDLFTMDYRFPISAFQAFAICLSSFDTKIACE* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0829 385 SUPERFAMILY F-box domain 28 77 IPR036047 GO:0005515
Gso15g0829 385 PRINTS Tubby superfamily signature 148 164 IPR000007 -
Gso15g0829 385 PRINTS Tubby superfamily signature 164 188 IPR000007 -
Gso15g0829 385 PRINTS Tubby superfamily signature 213 240 IPR000007 -
Gso15g0829 385 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Gso15g0829 385 PRINTS Tubby superfamily signature 315 331 IPR000007 -
Gso15g0829 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Gso15g0829 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Gso15g0829 385 Gene3D - 26 88 - -
Gso15g0829 385 Gene3D Tubby Protein; Chain A 90 385 IPR025659 -
Gso15g0829 385 Pfam Tub family 94 380 IPR000007 -
Gso15g0829 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Gso15g0829 385 Pfam F-box domain 33 79 IPR001810 GO:0005515
Gso15g0829 385 SUPERFAMILY Tubby C-terminal domain-like 82 385 IPR025659 -
Gso15g0829 385 ProSitePatterns Tub family signature 1. 315 328 IPR018066 -
Gso15g0829 385 PANTHER TUBBY-RELATED 4 385 - -
Gso15g0829 385 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0829 Gso-Chr15 7618704 7623935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0829 8 385 TUB Transcription Factor Family AT2G47900 71.654 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso15g0829 Tub 1.1e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0829 K19600 - gmx:100815464 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0829 15 7618704 7623935 Gso11g2442 11 40443175 40448488 GST
Gso7g2131 7 45128971 45131545 Gso15g0829 15 7618704 7623935 PCT
Gso17g0176 17 1654755 1657145 Gso15g0829 15 7618704 7623935 PCT
Gso15g0829 15 7618704 7623935 Gso7g2131 7 45128971 45131545 PCT
Gso15g0829 15 7618704 7623935 Gso17g0176 17 1654755 1657145 PCT