Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0827 ATGGGGTGTGCGTTTGGAAGAGAGGCTTCGAGGGAGGAGAGGAGAGAGGAAGTGAGAGAGGCAAAAGCTGAGGAGGAGGGTAGAGGAGAGGTTGTTGAGAATGAGAACATTGAGAAGGAGGGTGGAAGAGAGGAGAGGAGGACAAGGGCAAGGGGAGAGAGGAGGCGATCTTCGAAGCCGAATCCGAGGTTGAGCAATCCTCCTAACCATGTTCATGGTGAGCAGGTTGCAGCAGGGTGGCCCTCTTGGCTCTCTAAGGTTGCTGGTGAGGCTATCAATGGATTGACCCCTCGGAGGGCCGACACTTTTGAGAAGATTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACTTTAACGGGGAAAATTGTTGCTCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCTGAGAGTGTCAAGTTCATGGCCAGAGAGATTTTGATTCTCCGGCGTTTGGATCATCCCAATGTCATCAAACTGGAAGGCTTAGTGACTTCTAGAATGTCATGCAGTTTATATCTTGTGTTTGAATACATGGTGCATGATTTGGCTGGACTTGCCACAAACCCAGCAATCAAGTTCACAGAGTCTCAGGTAAAATGTTACATGCATCAGTTATTTTCTGGACTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCGAACCTTCTTATTGACAATGATGGAATTCTCAAGATTGGTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCACCCTATGACCAGTAGAGTGGTTACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAATATAGTGTAGGAGTGGATCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGGTGGAGCAGCTACACAAGATATTCAAACTATGTGGTTCTCCTTCTGATGAATATTGGAAAAAGTCAAAGTTGCCTCATGCTACCATTTTTAAGCCCCAACAATCATACAAGCGATGCATTGCAGAGACATATAAAGATTTTCCTCCATCATCTCTGCCACTTATGGATACCCTTCTCGCAATCAATCCAGATGAACGTTTGACTGCCACTGCTGCATTGCATAGTGAATTCTTCACAACAAAACCATATGCTTGTGAGCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGGAGATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAATTGCAGTTCCAGAGGCCAATGCCGAACTGCAAGCAAATATTGATAGACGACGGCTGATCACACATTCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCCCCTGATGTTCCATTTAGTTCTACAAACTTCTCACAACCTAAAGCAAATATCCAAACCTGGTCCGGCCCATTGGTAGATCCTTCTGGTGTGGGCGTGCCGAGGAGAAAGAAGAAACATGGCAAGTGA 1626 0.4606 MGCAFGREASREERREEVREAKAEEEGRGEVVENENIEKEGGREERRTRARGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKIDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIGDFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETYKDFPPSSLPLMDTLLAINPDERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRERVGRGIAVPEANAELQANIDRRRLITHSNAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKANIQTWSGPLVDPSGVGVPRRKKKHGK* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0827 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gso15g0827 541 Gene3D Transferase(Phosphotransferase) domain 1 186 426 - -
Gso15g0827 541 Gene3D Phosphorylase Kinase; domain 1 91 185 - -
Gso15g0827 541 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Gso15g0827 541 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0827 541 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0827 541 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0827 541 SUPERFAMILY Protein kinase-like (PK-like) 98 392 IPR011009 -
Gso15g0827 541 PANTHER CELL DIVISION PROTEIN KINASE 1 541 - -
Gso15g0827 541 MobiDBLite consensus disorder prediction 504 523 - -
Gso15g0827 541 MobiDBLite consensus disorder prediction 1 74 - -
Gso15g0827 541 MobiDBLite consensus disorder prediction 7 60 - -
Gso15g0827 541 MobiDBLite consensus disorder prediction 467 541 - -
Gso15g0827 541 CDD STKc_CDK9_like 103 387 - -
Gso15g0827 541 PANTHER CYCLIN-DEPENDENT KINASE 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0827 Gso-Chr15 7598075 7603059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0827 98 425 Core Cell Cycle Gene Families AT5G10270 49.709 1.98e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso15g0827 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0827 K08819 - gmx:100814934 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0827 15 7598075 7603059 Gso11g2445 11 40461966 40466856 GST
Gso7g2130 7 45123327 45128178 Gso15g0827 15 7598075 7603059 PCT
Gso17g0177 17 1657889 1662783 Gso15g0827 15 7598075 7603059 PCT
Gso15g0827 15 7598075 7603059 Gso7g2130 7 45123327 45128178 PCT
Gso15g0827 15 7598075 7603059 Gso17g0177 17 1657889 1662783 PCT