Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso15g0818 | ATGGCGAGACCTTCCAAGCTACACTCATCTTCCGACGAAGCGCTCTCCAATGCTTCGAGTTCCTCCGATGAAGAGGAGCAAGTCAACGAGCAGATCAACGAAGAGGAAGACGAGGAGGAGCTCGAGGCGGTGGCGCGCCCTGCCAGTTCTGCTGACGACGACGACGAAGTCGCCGGCGACAATCCGCCGGACTCCGATGAAGATCCAGCCGCCGATGACGCTGACGATGACCAGGATGGGGATAATGTTGATCCCGAAATTAGCAAGCGAGAGAAGGCGAGATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATACTGGATGTACAGAATGCGGCCATTGACGCTGACATGAACAATAGAGGGAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGGGATCAATCTTCGTCTCAGAAGAAGTCAAGGGGAAGGGGTCGCCATGCATCCAATTTCACCGAGGAAGAAGAAGATGAAGAATACCTAAAAGGAGAAGAAGATGGTCTAGCAAACACACGTCTGGTGACACAACCATCATGTATCCAAGGGAAAATGAGGGATTACCAGCTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCCTTATTAGGTTATTTGCACGAGTTCCGAGGAATCAAAGGTCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGAGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTACCGTCTCCTTATTACTGGCACGCCACTTCAGAATAACCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGATTGCCACCAAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCCCTACTTCAGAAGGATCTTGAGGTTGTAAACGCTGGTGGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTCCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTTATTGAAAACGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTCGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGTACTGAGTATACAATAGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAATTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAAGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTAGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCCGAGTTATATGATTTTGATGATGAGAAGGATGAAAGCAGATTTGATATAAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCCAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAATTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACACCAGAGGAATCAGATAAAGGATTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACAGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGAAATGATATACAAAGTATTGCTTCTGAGATGGAAGGAAAAACCGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAAGAATCCGTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTGCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTCAAATCTCGCACCACTCAAGAACTGGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAGCATGACCCCATCGAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGGGGAAGAGAAGAAAATAA | 3219 | 0.4293 | MARPSKLHSSSDEALSNASSSSDEEEQVNEQINEEEDEEELEAVARPASSADDDDEVAGDNPPDSDEDPAADDADDDQDGDNVDPEISKREKARLKEMQKMKKQKIQEILDVQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASNFTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIRDELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDESRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQRNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIQSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSSLKKRKQLTMDDYASTGKRRK* | 1073 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso15g0818 | 1072 | CDD | SF2_C_SNF | 498 | 623 | - | - | |
| Gso15g0818 | 1072 | Gene3D | ISWI, HAND domain | 749 | 847 | IPR036306 | GO:0003677|GO:0006338|GO:0031491 | |
| Gso15g0818 | 1072 | SUPERFAMILY | Homeodomain-like | 851 | 901 | IPR009057 | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 143 | 173 | - | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 1020 | 1072 | - | - | |
| Gso15g0818 | 1072 | Coils | Coil | 1005 | 1032 | - | - | |
| Gso15g0818 | 1072 | Gene3D | - | 198 | 413 | IPR038718 | - | |
| Gso15g0818 | 1072 | CDD | DEXHc_SMARCA1_SMARCA5 | 194 | 414 | IPR044754 | GO:0005524 | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 1 | 92 | - | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
| Gso15g0818 | 1072 | Coils | Coil | 15 | 42 | - | - | |
| Gso15g0818 | 1072 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 183 | 412 | IPR027417 | - | |
| Gso15g0818 | 1072 | Pfam | Helicase conserved C-terminal domain | 500 | 612 | IPR001650 | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 1050 | 1072 | - | - | |
| Gso15g0818 | 1072 | CDD | SANT | 851 | 895 | IPR001005 | - | |
| Gso15g0818 | 1072 | Gene3D | - | 418 | 710 | IPR027417 | - | |
| Gso15g0818 | 1072 | SUPERFAMILY | Homeodomain-like | 903 | 1025 | IPR009057 | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 756 | 777 | - | - | |
| Gso15g0818 | 1072 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 9 | 1072 | - | - | |
| Gso15g0818 | 1072 | Coils | Coil | 88 | 115 | - | - | |
| Gso15g0818 | 1072 | Pfam | SNF2-related domain | 210 | 477 | IPR000330 | GO:0005524|GO:0140658 | |
| Gso15g0818 | 1072 | Gene3D | iswi atpase | 903 | 935 | - | - | |
| Gso15g0818 | 1072 | SUPERFAMILY | HAND domain of the nucleosome remodeling ATPase ISWI | 760 | 850 | IPR036306 | GO:0003677|GO:0006338|GO:0031491 | |
| Gso15g0818 | 1072 | Pfam | SLIDE | 905 | 1015 | IPR015195 | GO:0003677|GO:0005634|GO:0006338 | |
| Gso15g0818 | 1072 | PANTHER | REMODELING FACTOR, PUTATIVE-RELATED | 9 | 1072 | - | - | |
| Gso15g0818 | 1072 | ProSiteProfiles | SANT domain profile. | 847 | 899 | IPR017884 | - | |
| Gso15g0818 | 1072 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 414 | 695 | IPR027417 | - | |
| Gso15g0818 | 1072 | SMART | helicmild6 | 528 | 612 | IPR001650 | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 54 | 82 | - | - | |
| Gso15g0818 | 1072 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 209 | 374 | IPR014001 | - | |
| Gso15g0818 | 1072 | SMART | ultradead3 | 193 | 385 | IPR014001 | - | |
| Gso15g0818 | 1072 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 502 | 653 | IPR001650 | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 27 | 42 | - | - | |
| Gso15g0818 | 1072 | Gene3D | - | 848 | 902 | - | - | |
| Gso15g0818 | 1072 | SMART | sant | 848 | 897 | IPR001005 | - | |
| Gso15g0818 | 1072 | SMART | sant | 950 | 1011 | IPR001005 | - | |
| Gso15g0818 | 1072 | Pfam | HAND | 761 | 843 | IPR015194 | GO:0003677|GO:0006338|GO:0031491 | |
| Gso15g0818 | 1072 | Gene3D | - | 936 | 1039 | - | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 1020 | 1036 | - | - | |
| Gso15g0818 | 1072 | MobiDBLite | consensus disorder prediction | 148 | 166 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso15g0818 | Gso-Chr15 | 7522660 | 7530615 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso15g0818 | 218 | 639 | RAD5 or RAD16-like Gene Family | AT1G02670 | 26.931 | 8.10e-41 | 159 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Gso15g0818 | SNF2_N | 1.2e-71 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso15g0818 | K11654 | - | gmx:100809750 | 2032.3 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso15g0818 | 15 | 7522660 | 7530615 | Gso11g2452 | 11 | 40522225 | 40530636 | GST | |
| Gso7g2122 | 7 | 45068691 | 45079775 | Gso15g0818 | 15 | 7522660 | 7530615 | PCT | |
| Gso17g0185 | 17 | 1707832 | 1717209 | Gso15g0818 | 15 | 7522660 | 7530615 | PCT | |
| Gso15g0818 | 15 | 7522660 | 7530615 | Gso7g2122 | 7 | 45068691 | 45079775 | PCT | |
| Gso15g0818 | 15 | 7522660 | 7530615 | Gso17g0185 | 17 | 1707832 | 1717209 | PCT |