Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0809 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGCCGGAATGGGCCGGGCCCGAAGCCCAAACCGGGCTCGAAGAGCCCATGTGGCAATTGGGAATGGGTGGTGCTGGGGAGGAATCGTATCCGCAACGCCCCGATGAGGTTGATTGCACTTACTATTTGAGGACTGGCTTCTGTGGCTTCGGTTCCCGCTGTCGGTTCAACCATCCTCGTGATCGTGCCGCGGTTGCTGGAGCTGAGAGGACCACAGGGGAGTATCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACATGCAAATTTGGTTCGTCTTGCAAGTACCACCACCCCAGGCAGGCAGGAGGCACTGCTGCTACTCCCATGTCACTAAGTTATTATGGATATCCATTGCGACCGGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAGCACCATCGCCAGTTGCCCCATCGCCTTTGCCTGTACCGGTACCTTCGCCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCGTCCCAGCAAATTGGGGTGCTGGTTGCAAGGCCTCCTATGTTGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGCGACAGGTGCTGTTCATCCTTCTGGTACTCCATCTAATGTTGGTTCACCACAGCTTTATGGGATAACCCAACTACCTTCACCAGTAGCTGCCTATCCTGGACCTTATCAACCTTCTGGTTCCCCAGTTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAACCAACCAGAATATCAGTATTATCCGAAAACAGGGGAGGTTAAATTTGGTCCATCATATAGGTATAACCCTCCACCGGACATGAGTGCACCAAAAGCAAATGTGATTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCGGCACCAGCTTGCATTCATTATGCACAACATGGAGTGTGTAAGTTTGGTTCTGCATGCAAATTCGATCATCATATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCAACAATTTCTACTCTTGCTCCATCATCTTCATCTTCAGAGTTGCGGCCTGAACTTACCTCAGGATCTAGCAAGGAGTCTGTTCCATCCAGAATGTCTTCATCAACATTGACTGGGTCAATTGGCTTGACTTTGTCAACTGGTGGGCCCATTTCTCAATCAAGCACTCAACCACCTTCCCAAAGTTCAGGTCCTTTAGCCACTGTCATTAGCACCACAAGTAGCAATGTCTCTCCCACCTCAACCTAA 1455 0.5113 MEQYGRSSEGSRSDPSPEWAGPEAQTGLEEPMWQLGMGGAGEESYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAVAGAERTTGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRQAGGTAATPMSLSYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSPYGPVVLSPAMVPISGWGPYQASATGAVHPSGTPSNVGSPQLYGITQLPSPVAAYPGPYQPSGSPVGPSSSSQKEQAFPERSNQPEYQYYPKTGEVKFGPSYRYNPPPDMSAPKANVILSPAGLPLRPGAAPACIHYAQHGVCKFGSACKFDHHMGSLSYSPSASSLADMPVAPYPVGSTISTLAPSSSSSELRPELTSGSSKESVPSRMSSSTLTGSIGLTLSTGGPISQSSTQPPSQSSGPLATVISTTSSNVSPTST* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0809 484 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Gso15g0809 484 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gso15g0809 484 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gso15g0809 484 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Gso15g0809 484 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gso15g0809 484 MobiDBLite consensus disorder prediction 288 313 - -
Gso15g0809 484 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Gso15g0809 484 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gso15g0809 484 Gene3D - 46 128 - -
Gso15g0809 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gso15g0809 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gso15g0809 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 356 378 IPR000571 GO:0046872
Gso15g0809 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Gso15g0809 484 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Gso15g0809 484 SUPERFAMILY CCCH zinc finger 50 77 IPR036855 GO:0046872
Gso15g0809 484 Gene3D - 129 173 - -
Gso15g0809 484 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Gso15g0809 484 SUPERFAMILY CCCH zinc finger 357 382 IPR036855 GO:0046872
Gso15g0809 484 MobiDBLite consensus disorder prediction 1 46 - -
Gso15g0809 484 MobiDBLite consensus disorder prediction 407 484 - -
Gso15g0809 484 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Gso15g0809 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 475 - -
Gso15g0809 484 MobiDBLite consensus disorder prediction 278 315 - -
Gso15g0809 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0809 Gso-Chr15 7439480 7446782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0809 1 430 C2H2 Transcription Factor Family AT5G18550 57.143 5.11e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g0809 zf-CCCH 3.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0809 - - gmx:100812433 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0809 15 7439480 7446782 Gso11g2460 11 40600689 40607925 GST
Gso7g2114 7 45005321 45010485 Gso15g0809 15 7439480 7446782 PCT
Gso17g0191 17 1772952 1778252 Gso15g0809 15 7439480 7446782 PCT
Gso15g0809 15 7439480 7446782 Gso7g2114 7 45005321 45010485 PCT
Gso15g0809 15 7439480 7446782 Gso17g0191 17 1772952 1778252 PCT