Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0770 ATGAGACTTTCTTCAGCTGATTTTAGTCCTCCACCCCAGGAAGGGGAAAAACGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCACGCTGATGTTGAGACTGATGAAGTGTACGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAATGAGGCATACCTTCCAGCAGAGTTGGGCACTGCAAGCAAACAGCCAACAAACTATTTCTGCAAAACTTTGACCGCCAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACCGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTGCTTCTTGGCATTCGCCGCGCTAATCGACCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCTTCAGAATTTGTCATACCCTTGGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGCATGCGGTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTGGTGACCTGGATCCTGTCCGGTGGCCAAACTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCGTTAACTACATTTCCTATGTATCCATCTTCATTCCCCCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCATGGCATGAAGGATGATGATTTTGGCCTGAATTCACCTCTGTTGTGGCTCCGAGACACCGATAGGGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGGGTTAATCCTTGGATGCAGCCAAGATTTGATCCCACCGTGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGCTGTTCAGGACATGAGGAGTTTAGATCCTTCCAAACAGCTTTCTGCTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAGAAGTCGCAACCTCAGCAGATTTTTGGAAATAATCAAGAGAATCAGCATTCACCACAATCTCAGCCACAGACTCAGGCTCATCTTCAGCAACATCTACAACATCAACACTCATTCAATAGTCAGCATCATCATCACCAGCAGCAACAACAGCAACAGCAAGTAGTTGATAATCAGCAGATTTCTAGTGCAGTCTCTACAATGTCTCAGTTGTTTTCAGCTCCTCAACCTCAATCACCACCTATGCAAGCTATCTCTTCCCTGTGCCAAAATTTTTCCAATTCAAATGGGAACTCTGTGACTACTATTGTTTCCCCCCTGCACAGTATCTTGGGTTCTTTTCCCCAGGATGAAACATCTCACCTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTATTCAAAATTCAAGTGGGTGGCCCTCGAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCCGGAGCCTCCCATTGTGTTCTACCTCAGGTGGATCAGCTAGGGCAACCACATAGTACCATGTCTCTAAATGCTATTACATTACCACCTTTTCCTGGTAGGGAGAGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCTTGTTTGGTGTTAATATAGACCCCTCGTCCCTTCTCATGCCTAATGGGATGTCAAGCCTTAAGGGGGTTAGCGGAAATAATAACTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACTACCACAGGCACTGATTCTTCATTGAATCATGGAATGACACCCAACATAGGCGACTCGGGTTTCCTGCATTGTCCGGAAGATGCAGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACCAAATTCAGCAGCTACCATGAGCTGCGTGGTGAACTCGCTCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTGTTGAACTCGGTTCCAAATCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGGATAACAACTGTGGGGTCTTTAGACTACTAA 2694 0.4625 MRLSSADFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADVETDEVYAQMTLQPLNPQEQNEAYLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSSFPLRLKRPWPPGLPSFHGMKDDDFGLNSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDPTVLNMQTDMYQAAAAAAVQDMRSLDPSKQLSASLLQFQQPQNFPNRTAALMQAQMLQKSQPQQIFGNNQENQHSPQSQPQTQAHLQQHLQHQHSFNSQHHHHQQQQQQQQVVDNQQISSAVSTMSQLFSAPQPQSPPMQAISSLCQNFSNSNGNSVTTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPIQNSSGWPSKRVAVDPLLSSGASHCVLPQVDQLGQPHSTMSLNAITLPPFPGRESSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSSLKGVSGNNNSSTLPYQSSNYLNTTTGTDSSLNHGMTPNIGDSGFLHCPEDAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSVPNQRLSNGICDDYVSRQDPRNLSTGITTVGSLDY* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0770 897 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gso15g0770 897 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso15g0770 897 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Gso15g0770 897 Pfam AUX/IAA family 761 849 IPR033389 -
Gso15g0770 897 Gene3D - 761 853 - -
Gso15g0770 897 Gene3D - 291 363 - -
Gso15g0770 897 Gene3D - 125 228 IPR015300 -
Gso15g0770 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 877 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso15g0770 897 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gso15g0770 897 MobiDBLite consensus disorder prediction 494 544 - -
Gso15g0770 897 PANTHER AUXIN RESPONSE FACTOR 1 877 - -
Gso15g0770 897 SUPERFAMILY CAD & PB1 domains 764 839 - -
Gso15g0770 897 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Gso15g0770 897 SMART B3_2 127 229 IPR003340 GO:0003677
Gso15g0770 897 ProSiteProfiles PB1 domain profile. 764 848 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0770 Gso-Chr15 6967598 6974400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0770 1 483 B3 DNA Binding Superfamily AT1G30330 86.270 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso15g0770 AUX_IAA 2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0770 - - gmx:100796447 1711.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0770 15 6967598 6974400 Gso15g0770 15 6967598 6974400 ECH