Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0743 ATGTCTGTGGTGGCCGATAATTCAGCAAACAATGGAAGCCACCAGGTGGTTTTAAATGTAAACGGTGATGCCTCCAAAAAGTGTGATGACTCATCTAACCAAGACTGTGTGCCACTTCTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACCTTGACAAGGACAAAGTGGTCACACAACCTGGGATTTCAATTGTTTGGGGCCTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACTATTGCTCATGCTACCACCAAAAGGTTTCCACTGAAGCAGGTACCCGCCTATGTGATAGCTCAGGTCGTTGGAGCCACACTTGCTAGTGGAACTCTCAGACTTATATTCAATGGCAAGAGTGACCACTTTACAGGAACACTCCCTGGCGGTTCTGACTTGCAATCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTCGTCATTTCTGGCGTTGCCACCGATAACAGAGCGATTGGAGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTGCTGAATGTGATGTTTGCCGGGCCACTCACAGGGGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACAATGAGTACAAAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCTGGTACTTGGGCCTATAATTTCATCAGGTACACAAATAAGCCAGTGCGTGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGTGGTGAAGCTGAGTGA 822 0.4708 MSVVADNSANNGSHQVVLNVNGDASKKCDDSSNQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVVTQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHATTKRFPLKQVPAYVIAQVVGATLASGTLRLIFNGKSDHFTGTLPGGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPLTGASMNPARSLGPAIVHNEYKGIWIYLVSPTLGAVAGTWAYNFIRYTNKPVREITKSASFLKGGEAE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0743 273 Gene3D Glycerol uptake facilitator protein. 3 263 IPR023271 -
Gso15g0743 273 SUPERFAMILY Aquaporin-like 37 261 IPR023271 -
Gso15g0743 273 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 269 - -
Gso15g0743 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PANTHER AQUAPORIN NIP2-1 5 269 IPR034294 -
Gso15g0743 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso15g0743 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0743 Gso-Chr15 6706642 6709157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0743 28 268 Major Intrinsic Protein MIP AT5G37820 59.600 7.38e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0743 K09874 - gmx:100786924 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0743 15 6706642 6709157 Gso15g0743 15 6706642 6709157 ECH
Gso5g1381 5 37287406 37290520 Gso15g0743 15 6706642 6709157 PCT
Gso8g1002 8 9286105 9288703 Gso15g0743 15 6706642 6709157 PCT
Gso15g0743 15 6706642 6709157 Gso5g1381 5 37287406 37290520 PCT
Gso15g0743 15 6706642 6709157 Gso8g1002 8 9286105 9288703 PCT