Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0729 ATGACTAGGGCTGTCCGTAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTGACAAATTGTATTCACCTGAAGAACCATATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGACCTAGTTGTGCTGCAGAGATCGCGGTCTCTTAGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTAGTTGACTTGCTTTTCAAAAGAGTTGAAAATGATGCTGTGTCTCAAGGGGGAAGAAGGTCTATAGGTGTCGAGCGAAGGAAGGAAGGGAGAAGATTGTCTGGAACTTCACCACCCTTGGTGAGTATAGGTTCATCAAGAGTTGCTCCAGGTGAGATTGTTAGGGGTAATGATGGGATAACGGCACCTAGTGAACGAAGTAGCAGGAGTGGAATGGGAGATGGAAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAATGATAGGCCTGACTTTTTGGATGTTAATCCAGAGGAGCCTCTCAATCAAGCTGGCAAAAGCTTGGCTGAAGATGTTATTTCAAGGCACTCAGAGTCTAAAGCTAGAAAGAGCAAACAAAGGGGGAAGAATGTTCAAGATGCTCAAGTTAAGACACTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGACTTAGCATCATCGAACATTCATTTTCGTGGAAGGTTTCCTAGGCAGGAGAAAATTATTAAGGAGGTAGAAGCCCGAATGCGCAGTCATGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAGTTTCGAAGTGCGCGAAGAACTCGGGTTGCTACAACATCAAGAGATATTGTAGCTGAGAATGAACTGTCTGTGGCTTCCAACTCATTAGCTCAGGCATCAGTTCACCATAAATATCATTTGGAGGAGGCTGATGAGTTTGCAGATGAAAATGTTACTAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCCGATTCAAGGTTGAAGAAAGGGACATTTGCTGCCAATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCGCTCAAGCTCATGTACCAGGTCTGATGCAGAGGCACTACCTTTACTAGTTGAGGCGTCAGGATCTCATGCAAGCACTGAAAATGCTTGTTGGGATCATTACTATTCTGGGGAACTAGGTCTTTTTGGTGATAATTTATTCAAGCATGATGTTGATTCTGACCTCGCTTCTGAAGCTAGATCTGGTGATCAGCGGAAGTTGAGAGGGAATCGTCACAGTAGACACCAAAGTTTAACACAAAAGTATATGCCTCGAACCTTCAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCGAACGCAGTTATGAAAAAGAAAGTTGGGTTGTTGTATGTGTTTTATGGCCCCCATGGCACTGGAAAAACTTCCTCTGCTCGCATATTTGCCAGAGCTCTGAACTGTAATTCTTCAGAACACCCAAAACCTTGTGGTTTTTGCAATTATTGCGTAGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTAGGTCCAGTTAGTAATTTTGACTTTGAGAGCATCATGGAACTACTCGACAATATGATCGTTTCCCAGCTTCCGTCACATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAACAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATATACATTGGAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCAGACGGATCTTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCCGTTCCTCTTGTCCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTCGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCAGAAAAGATAGGCGAAGAAGGAAGTTCTTCCGGAGACCACTGTTGTCCAAAGAAGACATGGAGAAGCTGCGTCAAGCTCTGAAAACTTTATCAGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCCTTACTTCAGCTTGCTCCAGACCAGCAATATGTGTTGCCAACTTCATCTGATAATAGTTTCAACCACAGTCCCTTTGCTCTAAAAGATGCAGATGCGAGAGAAGCAGCTAGACTGACTGGTAATCCCGTTGACATTCCTAACAAAGGAAGACGATTATCAATGGATGCTAGAATTGAAAATGTCCATGCTGGAAGCTCAGCAGATGGTATGACAAGGGGTCTTGGTTCTGAGAAAAAACGACATAGTGTGTCTGGTTTTACTCCTCAACATGCTAATTCACAAGCCACTGAAAAGATTAGGATGAGCGAGAGGCAGATTTTGGGTATAAACCGTACAAAAATTGAAGAGATATGGTTAGAGGTGCTTGAGAGGATACAAATTACTGGTCTGAAAGAGTTTTTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTCAGTTCTCAATTGACCAAATCTACTGCCGAGAAGTTCAGAGGTCACATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTATAACAATAGAAATTAGATGTGAGTTAAATAAAGATACAGCCTCGGCTGTTCAACAACCTCTTACATTGCCCTCTACTAATGATAGTTCGTCTCAGATTAGAGACTTTAATGGTGTTGGCACTCTAGCTCATCCATCAGTAACTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCAGCTTCTCAAGTGGAGCAAAAGAATAGCAAGCAGCAGGTTGATGCTCATGGAACATCTTATAAAAGTTTAGAAGGTACAAGTATAGGACAATCATCAGCTTCCCAAAAAAAGCCAATTGTTAAGTCGCATTTAGACCAAAGAAAGCTTATGGAGCAAGGTCAAAGTCGGAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTGATCCAGCAGGCAGAAGGTCAGAGAAGTGGGTGGTCAAAACGTAAAGCGGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCTAGGAGCTTGCTATGCTGGAAAGCATCAAGAGTAACCCGGCGAAAGCTGTCACGCTTGAAAATTCGAAGCCGAAAACCACGTGCACTGCTGAATCTTGTCTCATGTGGAAAATGTCTGTCTACAAAATCTCCAAGGTAG 3576 0.427 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRRSIGVERRKEGRRLSGTSPPLVSIGSSRVAPGEIVRGNDGITAPSERSSRSGMGDGRRVGREESGRKNDRPDFLDVNPEEPLNQAGKSLAEDVISRHSESKARKSKQRGKNVQDAQVKTLSEQLNDVPLDSDDLASSNIHFRGRFPRQEKIIKEVEARMRSHGSGMNRGKRRKFRSARRTRVATTSRDIVAENELSVASNSLAQASVHHKYHLEEADEFADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLKKGTFAANGRNISEMPVASERSSSCTRSDAEALPLLVEASGSHASTENACWDHYYSGELGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMKKKVGLLYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNFDFESIMELLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLEWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFRKDRRRRKFFRRPLLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFALKDADAREAARLTGNPVDIPNKGRRLSMDARIENVHAGSSADGMTRGLGSEKKRHSVSGFTPQHANSQATEKIRMSERQILGINRTKIEEIWLEVLERIQITGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCELNKDTASAVQQPLTLPSTNDSSSQIRDFNGVGTLAHPSVTDSVEKRRGEIVEEAASQVEQKNSKQQVDAHGTSYKSLEGTSIGQSSASQKKPIVKSHLDQRKLMEQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR* 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0729 1191 MobiDBLite consensus disorder prediction 91 210 - -
Gso15g0729 1191 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Gso15g0729 1191 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Gso15g0729 1191 MobiDBLite consensus disorder prediction 146 171 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 254 275 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 1065 1085 - -
Gso15g0729 1191 SMART AAA_5 489 630 IPR003593 -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 187 206 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 865 897 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 438 457 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 1065 1083 - -
Gso15g0729 1191 PANTHER PROTEIN STICHEL-LIKE 3 180 1158 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 1003 1019 - -
Gso15g0729 1191 MobiDBLite consensus disorder prediction 259 275 - -
Gso15g0729 1191 CDD AAA 471 630 - -
Gso15g0729 1191 Gene3D - 448 627 IPR027417 -
Gso15g0729 1191 Coils Coil 766 793 - -
Gso15g0729 1191 Pfam DNA polymerase III, delta subunit 473 630 - -
Gso15g0729 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 677 IPR027417 -
Gso15g0729 1191 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1158 - -
Gso15g0729 1191 Pfam DNA polymerase III subunits gamma and tau domain III 686 746 IPR022754 GO:0003887
Gso15g0729 1191 MobiDBLite consensus disorder prediction 1003 1033 - -
Gso15g0729 1191 Gene3D - 631 693 - -
Gso15g0729 1191 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0729 Gso-Chr15 6591696 6596887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0729 456 752 Core DNA Replication Machinery Family AT1G21690 24.080 3.21e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0729 - - gmx:100793832 2258.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0729 15 6591696 6596887 Gso15g0729 15 6591696 6596887 ECH
Gso15g0729 15 6591696 6596887 Gso11g2544 11 41482788 41490047 GST