Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0727 ATGTCAAAGAAGCAAAATATGGGAGCAGTGAGTGATGGAAACCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTAGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAAAAGGTTAGGCTTTGGCTTGGAACATTTGACACTGCTGAGGATGCAGCTCGAGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCTGAGTCTTCTTCTGGTGGTGCTACTAAGCGTGGTGGTTCTAAGTTTGTGCCTGATTGCACTGAACCCTTTTCTTTTGAGGATGTGAATGAGCCAGGTTCAGAAGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAGCTGCTTGATGGAAAGAAAGGGAAGTTTCAGTTTCAATTTCTTGGTAATTGTTCTGCCCCGGTTGTTCAATCTGGCATGGTTTCAAGATCAACTCAGAACTGTTCTGGGAAGAAAGAATTGCTATTACCATCATCAGCTAATAATACTGTTCTTTCAAGGATGAATGGAACTGGAACTTGCAGCCCTGTGCATGGTTTAATGAGTACTTTAGCTTCATCAAACACTTGTGCTAAGACTGTGGTTATCCCAAATCATGATCATGAATTAGTTGCTGTAGCAAGCACAAGCAGTGGTAGAGTCTACTCTCATCAACTTTGTCAAACCCCACCTGTGACAACATGGCCCAATGAAGTGGCATATGATTTGCCTTGGCCTACACAATATATGAGTCAAGTTCCTGATAATAGCCTTCTTGCATCTTCCGGTGCTGTAGCCACCTTGTCTACATGGCCACTTTCTGGGGTAACTGAGTCTACTGTTGATATGACATACATGGATCAGGGACAATCAAATAGCAACAAAAGTGGCCAAATGATGAATATGGTGAGCATGCAATTGCCTCTAGTTGGTGGTGCAAATGAAGGCCTTTGGACATTGGAGCAGCAACAATTTGTGCAATGTGATCAGAACAACAGCTGGTTTAGTTTTAATGGCTCTTGGGATCCTCTCCTCTATGTGCCCTCTGAGCTAACTTGA 1089 0.4454 MSKKQNMGAVSDGNRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPESSSGGATKRGGSKFVPDCTEPFSFEDVNEPGSEAEGLLGALKAKLLDGKKGKFQFQFLGNCSAPVVQSGMVSRSTQNCSGKKELLLPSSANNTVLSRMNGTGTCSPVHGLMSTLASSNTCAKTVVIPNHDHELVAVASTSSGRVYSHQLCQTPPVTTWPNEVAYDLPWPTQYMSQVPDNSLLASSGAVATLSTWPLSGVTESTVDMTYMDQGQSNSNKSGQMMNMVSMQLPLVGGANEGLWTLEQQQFVQCDQNNSWFSFNGSWDPLLYVPSELT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0727 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 4 357 - -
Gso15g0727 362 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gso15g0727 362 MobiDBLite consensus disorder prediction 1 15 - -
Gso15g0727 362 MobiDBLite consensus disorder prediction 1 31 - -
Gso15g0727 362 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Gso15g0727 362 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gso15g0727 362 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Gso15g0727 362 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Gso15g0727 362 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 357 - -
Gso15g0727 362 SUPERFAMILY DNA-binding domain 28 84 IPR016177 GO:0003677
Gso15g0727 362 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gso15g0727 362 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0727 Gso-Chr15 6545303 6546531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0727 15 83 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.59e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g0727 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0727 - - gmx:102661478 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0727 15 6545303 6546531 Gso11g2549 11 41537358 41538604 GST