Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0712 ATGCCAGAAGGGTATGAGATTCATGACAATGAGGAAACTTCATCGGGATGTTCGTCTTCATTTGATTTGAATGAAGAATTAGCTTGCAGTGAAGATAACAGTGATACAGAAGAGTGCTGTGAGCTCACAACAACTAATGAGAAAGCAAAGGATGAAGGCACTTCAGCAAATGGAAGTAGCATATCATCAAGAGAAGGAAATGAGAGAAGAGGAACGGTAAGACAATATGTTAGATCCAAGATGCCTAGGCTTCGGTGGACTCCTGAGCTTCATCATTCATTTGTGCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCTACACCCAAGTTGGTGCTTCAACTAATGAATGTGCGAGGACTCAGCATTGCTCATGTCAAAAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGTTGGGCAAGTACTAAGTCAAACGTCCAAGTCCAACCAAGAAGTAGCTCGTAGACCTTTGATACTCCATCAGTGCATAATTCCTCAGCAACATCTTATGATGGGGAATGGTGGAATTATTCTAGCAAGTAATTTCAACAAACATAATCATTTCCCAAGTCTTCTGCATCCCTCCTTCTCCCTATCACGTTCACAGACAAACGACTCCGATTCAAGGCACCAACATTGGTACACCAATCACCAAGATTTTAGCATACCAATAGCTTCAAGCCAAATTCAACCAAAGGATACACGCGGCCGAATTGCCCCCATGAGACCAAGCCAATTGCTTGAAGAGAAAAGGTGGCCTCCGTTAGAAATTTTGAACAATCATCAATCGATGTTGAAAAGGTTACCTGCCATTGTTGCTCCTAAAAATGGGTCACAAGCTGTTCAACCAGCTGAATGGAGTTTTGTGAATAACACAAGCATCAGAGATTATCTATCGAACAACTCCAATGAACCTCTCAACAATTCCAACAGTTTAAAGCTAGAATTTGATCCTCCATTTCGGATTAAGAAAGACGAGCAACAATTGCCTGATTTGCAACTGGGTTTGAGTCACACAGTTGGAACTGATGGCAAGATAGATCATTATAAAGAAACCCCAGAAATCAGCACCAAGCTTTCACTTTCTTAG 1098 0.418 MPEGYEIHDNEETSSGCSSSFDLNEELACSEDNSDTEECCELTTTNEKAKDEGTSANGSSISSREGNERRGTVRQYVRSKMPRLRWTPELHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEVGQVLSQTSKSNQEVARRPLILHQCIIPQQHLMMGNGGIILASNFNKHNHFPSLLHPSFSLSRSQTNDSDSRHQHWYTNHQDFSIPIASSQIQPKDTRGRIAPMRPSQLLEEKRWPPLEILNNHQSMLKRLPAIVAPKNGSQAVQPAEWSFVNNTSIRDYLSNNSNEPLNNSNSLKLEFDPPFRIKKDEQQLPDLQLGLSHTVGTDGKIDHYKETPEISTKLSLS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0712 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 365 IPR044848 GO:0003700
Gso15g0712 365 MobiDBLite consensus disorder prediction 28 72 - -
Gso15g0712 365 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Gso15g0712 365 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Gso15g0712 365 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 365 - -
Gso15g0712 365 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Gso15g0712 365 MobiDBLite consensus disorder prediction 49 66 - -
Gso15g0712 365 MobiDBLite consensus disorder prediction 344 365 - -
Gso15g0712 365 Gene3D - 81 138 - -
Gso15g0712 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0712 Gso-Chr15 6388131 6392829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0712 73 166 G2-like Transcription Factor Family AT2G42660 62.766 1.13e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso15g0712 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0712 - - gmx:100787474 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0712 15 6388131 6392829 Gso15g0712 15 6388131 6392829 ECH
Gso15g0712 15 6388131 6392829 Gso11g2565 11 41714250 41719151 GST
Gso5g1353 5 37023300 37029554 Gso15g0712 15 6388131 6392829 PCT
Gso8g0975 8 9010291 9016225 Gso15g0712 15 6388131 6392829 PCT
Gso15g0712 15 6388131 6392829 Gso5g1353 5 37023300 37029554 PCT
Gso15g0712 15 6388131 6392829 Gso8g0975 8 9010291 9016225 PCT