Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0678 ATGGATATTCATAGTAATCATGGTGCAACTTCTGAAGGGATTCTTGAGAATGTGTGGGCCAAAATTATGAGCAGTGATAGAGCAGATGGAAGAAAAGGTGATGCCGCAGAATGTTCTAACTCTTGGGAAGAACTTCCTAACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGGCTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGAAGGTATTATTCTACCTAACACAAGCAATACAGAATATTCCGGTAGCAATAACAACTTGGAAATTGGAAGCGCTAATGAAACTCATAACAAGGTGGGAGATGCTGTGAGAATAGAGAAGTCAGTTACAAAACACTACCGGGGAGTTAGGAGAAGGCCATGGGGTAAATATGCTGCAGAGATTAGAGACTCATCAAAGAAAGGTGCTAGAGTTTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTTTGTCTTATGACAAGGCTGCTTTGAGGATTAGAGGTCCAAAGGCATACCTTAATTTCCCACTTGAGATGGTTGCAAATGCTTTAGCATGTGACCACAAAGCTGTAACTCATCTTGCTTGCACATGTATAGGGACCAAAGAAAAATTGATCAACTCCAGGAAGAGAGCATCAAGGGAAAGGGAAGCATTTGATGATATCATGAATGAACAACCTGCAACAAAAAAGTTGGAATGCATGGTAGAAAATGAACTAGGTGCTTTTGTATTTCATGACCTAGGAAGTGATTACTTGGACAGTTTACTGTCTTCTTTTTGA 801 0.407 MDIHSNHGATSEGILENVWAKIMSSDRADGRKGDAAECSNSWEELPNLDGREGSMEILQRLPSLGRWISMGADFWEEVLEGIILPNTSNTEYSGSNNNLEIGSANETHNKVGDAVRIEKSVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALSYDKAALRIRGPKAYLNFPLEMVANALACDHKAVTHLACTCIGTKEKLINSRKRASREREAFDDIMNEQPATKKLECMVENELGAFVFHDLGSDYLDSLLSSF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0678 266 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 266 - -
Gso15g0678 266 SMART rav1_2 124 188 IPR001471 GO:0003700|GO:0006355
Gso15g0678 266 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Gso15g0678 266 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Gso15g0678 266 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Gso15g0678 266 ProSiteProfiles AP2/ERF domain profile. 124 182 IPR001471 GO:0003700|GO:0006355
Gso15g0678 266 SUPERFAMILY DNA-binding domain 124 184 IPR016177 GO:0003677
Gso15g0678 266 Gene3D AP2/ERF domain 123 184 IPR036955 GO:0003700|GO:0006355
Gso15g0678 266 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Gso15g0678 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0678 Gso-Chr15 6090279 6091248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0678 14 266 AP2-EREBP Transcription Factor Family AT4G18450 37.459 1.14e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso15g0678 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0678 - - gmx:112999553 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0678 15 6090279 6091248 Gso15g0678 15 6090279 6091248 ECH
Gso15g0678 15 6090279 6091248 Gso11g2608 11 42055523 42056642 GST