Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0677 ATGGGAAGCAACAAAACCTACGAGGAAGAAGAAAGCACGGTTCTATTTTCCCATTCCCAAACACAAACAGAGTTGTTACCCTTCAACGAGAACGACCCGCAGGACATGGTCATATACCAAGTCCTCAACGAAGCCAATGCTCTCACCAACACATTTCTCCCTCAGAGGCTTCACCAACCTCAGTTGTGCCTCGAGCCCACCAGAAACATAACAAAGAAGCACTACAGAGGAGTTCGGCGCCGCCCCTGGGGAAAATACGCCGCTGAGATTCGCGACTCTGCCCGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAAACCGCTGAAGAGGCTGCCATGGCTTATGACCGAGCCGCGTTCAAGATGAGGGGCTCCAAGGCTTTGCTCAATTTCCCAGCTGAAATTGTTGCTGCAACGGAGTTATCTTTCAATAATACTAATAGTAACAATCACGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCGTTCAGCTAAATAGGAATCAGTCAGAAAGCTGCACAAGTAGCACAGGTTAG 552 0.4982 MGSNKTYEEEESTVLFSHSQTQTELLPFNENDPQDMVIYQVLNEANALTNTFLPQRLHQPQLCLEPTRNITKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEIVAATELSFNNTNSNNHDAVSDSSAGSSCTNNSVQLNRNQSESCTSSTG* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0677 183 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Gso15g0677 183 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Gso15g0677 183 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Gso15g0677 183 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Gso15g0677 183 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Gso15g0677 183 MobiDBLite consensus disorder prediction 149 183 - -
Gso15g0677 183 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Gso15g0677 183 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Gso15g0677 183 PANTHER DNA-BINDING DOMAIN 6 149 IPR044808 GO:0003700|GO:0009873
Gso15g0677 183 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 6 149 - -
Gso15g0677 183 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0677 Gso-Chr15 6086080 6087019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0677 26 135 AP2-EREBP Transcription Factor Family AT5G47220 50.000 1.14e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g0677 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0677 K13433 - gmx:100811533 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0677 15 6086080 6087019 Gso15g0677 15 6086080 6087019 ECH
Gso15g0677 15 6086080 6087019 Gso11g2609 11 42059438 42060400 GST