Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0675 ATGGGGTTGATCGATCTGAACACCACGGAGGATGATGAAGCTGCTCCATTATCTGCTTCTTCTTCTCACTCGGGGATAAGCACTTCTGCTTCAACCTTGGTTGTTTCTCCTCCTCCTTCTGTGTGCTTGGAACTGTGGCACGCGTGTGCGGGCCCTTTGATCTCTCTGCCTAAGAGAGGAAGTGTTGTTGTTTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCAATGCTTTTGATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTACTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCATAGCTTGCGGGAAGGGGAAATTGTTGCTGATGGGGAAGAGGAGGATACTGGAGCTACGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTCTCAGTTCCCCGTCGGGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAACTTGTGGCAAAGGATCTTCATGGCCTGGAATGGAGGTTTCGTCATATATATAGGGGCCAACCACGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTATTGTTTCTTAGGGGCAATGATGGAGAACTGAGATTAGGGATTCGCAGGGCAGCTCAGTTGAAATGGGCTGGTTCCTTTGCAGTTCCCTCAGGTCAGCAATTGAATCCTGCAACTCTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCATTTAGTGTTTGCTATAATCCAAGGTTCAGCTCTTCGGAATTCATCATACCTGTTCACAAATTCTTAGAGAGCCTTGACTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCGGCAGATCGAAGATTCACTGGATTAATTGCTGGAATTAGTGATGTTGATCCTGTTAGATGGCTCGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAATTCCAGTAACTTGATGGCAGCTGGTTTGAAGAGGAACAGGATTGAAATGACTTCAGCAAAACTGGAATTTCCCAATCCCAATGGGATTCAAACATCAGACTTTGGGGAATCGTTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCCCCTTTGATGGTATTAATGCTCAGAGTCCCTGGTTATACGAGTTAGGGAGGTGCTATCCTGGTTCAAACTGTTCTGGGATTCCTCCAACAGGAAATAACATCAGAGTGCCGCATCCGGCATCTGATTTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGCCTTATCTATTGAGGAGGCTCGAGCAAATGGTCGCTATGGATTTTATGATGGCTGTCAGTTACTTAACTCCAGAAATGGATGGTCTGCACAGATGCATGACAATGCTTCACATTTGCATGCATCTGTTACACCTGCGCAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAGCATTAACAAATGTAATAAGGAAATGGAGGGTAGAATCCATTATCAAGGCTTATACACATCTGAAATGAAAGGTAGAACATTGGCATCTTCCCCATCTGACGATCTTATTGTATCTAGGCGAGCTCCAGAGGGTGCTAGTTCTATAGGTATGTTTGATGTTCATAATCAGTTGGGTAGTTCACAGTTACATGAATCAGTGTCAGCATTGAGAAGCAGTCAAAAGTTGGTTTCCTCATGTAAAAGTAGTTGCAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAAATGAAGAGGTATCAGCCTCTACCATCACTTTACCATTGAGTTCTGGACCTTCGTTTACTAGACTTGTTGAAGATGAGTTCCATCCTGGCCATTCGCATCCGAGTAAGGCGGTTGGAAGTAACTGCACCAAGAGTGTATTGCAGTATTGA 2187 0.4486 MGLIDLNTTEDDEAAPLSASSSHSGISTSASTLVVSPPPSVCLELWHACAGPLISLPKRGSVVVYLPQGHFEHVQDFPVNAFDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEHSLREGEIVADGEEEDTGATVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGNDGELRLGIRRAAQLKWAGSFAVPSGQQLNPATLMDVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLESLDCSYSVGMRFRMRFETEDAADRRFTGLIAGISDVDPVRWLGSKWRCLLVRWDDIEAARHNRVSPWEIEPSGSASNSSNLMAAGLKRNRIEMTSAKLEFPNPNGIQTSDFGESLRFRKVLQGQEILGVNTPPFDGINAQSPWLYELGRCYPGSNCSGIPPTGNNIRVPHPASDFSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRYGFYDGCQLLNSRNGWSAQMHDNASHLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYSINKCNKEMEGRIHYQGLYTSEMKGRTLASSPSDDLIVSRRAPEGASSIGMFDVHNQLGSSQLHESVSALRSSQKLVSSCKSSCRLFGFSLTEDTHVANEEVSASTITLPLSSGPSFTRLVEDEFHPGHSHPSKAVGSNCTKSVLQY* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0675 728 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Gso15g0675 728 SUPERFAMILY DNA-binding pseudobarrel domain 142 252 IPR015300 -
Gso15g0675 728 CDD B3_DNA 147 249 IPR003340 GO:0003677
Gso15g0675 728 SMART B3_2 149 251 IPR003340 GO:0003677
Gso15g0675 728 MobiDBLite consensus disorder prediction 13 29 - -
Gso15g0675 728 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Gso15g0675 728 Gene3D - 312 386 - -
Gso15g0675 728 Gene3D - 147 251 IPR015300 -
Gso15g0675 728 MobiDBLite consensus disorder prediction 1 29 - -
Gso15g0675 728 Pfam Auxin response factor 276 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso15g0675 728 PANTHER AUXIN RESPONSE FACTOR 33 728 - -
Gso15g0675 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 728 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0675 Gso-Chr15 6047424 6053328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0675 148 507 B3 DNA Binding Superfamily AT2G33860 58.402 4.08e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso15g0675 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0675 K14486 - gmx:100810458 1461.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0675 15 6047424 6053328 Gso15g0675 15 6047424 6053328 ECH
Gso15g0675 15 6047424 6053328 Gso11g2612 11 42091919 42098223 GST