Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0672 ATGACATGGTGCAATGACTCTGATGAGGATAGGGTTATTGAATCAACGACGCCAACAATAACTATTACTCCTAACACTGATGGCATAAAGCTCACCGAAGAAATTAGAACCATAACATGCCCCTCGTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATCCATGACTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACCAAGAAATATTAGAACATTTGGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGACGAGTTCATACCAACGCTTGAAGGCGAAAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGTGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCCTCAAAAGCATACACAACTGGAACGAGGAAAAGAAGAAAAGTTCACACTGATGATGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCAGCAGCCGGTGGTGCAGTAAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGAAGACAAAAGAAGCCTGAGAAAACTAATTGGGTGATGCATCAATACCATCTTGGCAGTACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTATCAGACACAACCTAGACAATGTGGCAATCCCATTATAATAAAGGATTCATACGAAAAAATGTTGAATGATGGAAGTGGCCAAGACAACATTAATATATCATTAATACCTAAAACTACTGCAACTCTTTTGGATTGCTACACTGCTCCTTACATAGATTATGATCACGTCCATGTGAGTCATAACAGGGAAAGTTCCTCACAACTAATTATTCCCAGCTCGGTTGTTCAAGTTGATGGCTCTTATATTCGCTTAACAATGGATGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGATTCTAG 969 0.4076 MTWCNDSDEDRVIESTTPTITITPNTDGIKLTEEIRTITCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAAAGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSTEEEKDGELVVSKVFYQTQPRQCGNPIIIKDSYEKMLNDGSGQDNINISLIPKTTATLLDCYTAPYIDYDHVHVSHNRESSSQLIIPSSVVQVDGSYIRLTMDAKKARFESNTGKRF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0672 322 Pfam No apical meristem (NAM) protein 62 203 IPR003441 GO:0003677|GO:0006355
Gso15g0672 322 Gene3D NAC domain 70 226 IPR036093 GO:0003677|GO:0006355
Gso15g0672 322 SUPERFAMILY NAC domain 55 222 IPR036093 GO:0003677|GO:0006355
Gso15g0672 322 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 301 - -
Gso15g0672 322 MobiDBLite consensus disorder prediction 140 155 - -
Gso15g0672 322 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 301 IPR044799 GO:0003700
Gso15g0672 322 MobiDBLite consensus disorder prediction 134 155 - -
Gso15g0672 322 ProSiteProfiles NAC domain profile. 61 222 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0672 Gso-Chr15 6019350 6022672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0672 1 232 NAC Transcription Factor Family AT4G28500 72.340 5.12e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso15g0672 NAM 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0672 - - gmx:100809389 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0672 15 6019350 6022672 Gso15g0672 15 6019350 6022672 ECH
Gso15g0672 15 6019350 6022672 Gso11g2616 11 42137440 42141832 GST