Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0669 ATGGACTACTATGGGATTTTGGAGGTTGACAGGAATGCCTCAGATGAAGAGTTGAAGAGAGCCTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAACCGAACCAATAAGAAAGAGGCTGAGATTCAATTCAAACAGATATCTGAATCCTACGAGGTTCTTAGTGATCCCCAGAAGAGAGCAATTTTTGATCGGTATGGAGAAGGTGGCCTTAAAGGTGGAATGCCAACACCGGATGAAGGTGTGGCTTCATTCTTCCGAACTGGGGATGGTCCAACAGCATTTAGGTTCAATCCCAGAAACGCAAACAACATTTTTGCAGAAGTGTTTGGGTGTTCAAGCCCATTTGGAGGAATGGGAATGGGGTTTGGCTGCGGTGGCAGAGGCAGAGGCATGGGCATGGGGGGTGGGTCGTGGGTGTCAAGGTCCTTTGGTGGAATGTTTGGCAATGACATGTTTAGAGAAGGCAGACCAATGAATCAAGTTCCGCGCCGCAAGGCACCTCCCATTGAAAATACATTGCTTTGCAGCCTTGAGGAGCTCTACAAGGGGAGTACCAGAAAGATGAAAATCTCAAGGGAAATTACACATGCAAGTGGGAGAATTTTTCTGGTGGAGGAAATATTAAACATTGAAATCCATCCGGGCTGGAAAAAGGGAACCAAAATCACTTTCCCGGAGAAAGGAAATGAGCAGCCAAATGTCATTGCTGCAGATCTTGTGTTTATTATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGATACAAAAGATATCACTTACAGAAGCTGAAGCTCTAACTGGCTACACCATTCAACTTACAACTCTAGATGGCAGGGGTCTGAACATCGTCGTAAAGAATGTGACTAATCCAGATTATGAAGAAGTGATCACCGGGGAAGGCATGCCAATTTCCAAAGATCCTACAAAGAAGGGTAACCTTAGAATCAAATTCAACATCGAAATCCCTGACATAGTTGGTGCCTGA 1011 0.4441 MDYYGILEVDRNASDEELKRAYRKLAMKWHPDKNRTNKKEAEIQFKQISESYEVLSDPQKRAIFDRYGEGGLKGGMPTPDEGVASFFRTGDGPTAFRFNPRNANNIFAEVFGCSSPFGGMGMGFGCGGRGRGMGMGGGSWVSRSFGGMFGNDMFREGRPMNQVPRRKAPPIENTLLCSLEELYKGSTRKMKISREITHASGRIFLVEEILNIEIHPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHSVFTRDGNDLVVIQKISLTEAEALTGYTIQLTTLDGRGLNIVVKNVTNPDYEEVITGEGMPISKDPTKKGNLRIKFNIEIPDIVGA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0669 336 Gene3D - 250 332 - -
Gso15g0669 336 PRINTS DnaJ domain signature 4 22 IPR001623 -
Gso15g0669 336 PRINTS DnaJ domain signature 22 37 IPR001623 -
Gso15g0669 336 PRINTS DnaJ domain signature 40 60 IPR001623 -
Gso15g0669 336 PRINTS DnaJ domain signature 60 79 IPR001623 -
Gso15g0669 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 333 IPR008971 GO:0006457|GO:0051082
Gso15g0669 336 Pfam DnaJ C terminal domain 172 331 IPR002939 -
Gso15g0669 336 CDD DnaJ_C 169 332 - -
Gso15g0669 336 Gene3D DnaJ domain 1 120 IPR036869 -
Gso15g0669 336 Pfam DnaJ domain 2 65 IPR001623 -
Gso15g0669 336 SMART dnaj_3 1 60 IPR001623 -
Gso15g0669 336 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Gso15g0669 336 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 2 332 - -
Gso15g0669 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 261 IPR008971 GO:0006457|GO:0051082
Gso15g0669 336 CDD DnaJ 2 57 IPR001623 -
Gso15g0669 336 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Gso15g0669 336 Gene3D - 170 248 - -
Gso15g0669 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 332 - -
Gso15g0669 336 SUPERFAMILY Chaperone J-domain 1 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0669 Gso-Chr15 5995688 5998905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0669 3 67 C2H2 Transcription Factor Family AT1G74250 37.681 2.99e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0669 K09510 - gmx:100804763 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0669 15 5995688 5998905 Gso11g2623 11 42201266 42204626 GST