Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0661 ATGGCGCCCAGGGACAAGACTAGTGCCGTTAAGCCTAGCGGTAACGCCGGGGTGAAGGACCTGCATTTTCGTGGAGTCAGGAAGAGACCGTGGGGGAGGTTCGCCGCCGAGATCAGAGATCCCGCCAAGAAGACCCGCGTCTGGCTCGGAACCTTCGACACCGCGGAGGAGGCGGCCCGTGCCTACGACGCCGCCGCGCGGGAGTTTCGCGGCCCTAAGGCGAAGACAAACTTCCCTCTCCCTTCGGAAAATTTTAAGAACGCGAGCCCTAGCCAAAGCAGCACGGTGGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCCGATTCCTCTCCGCTCGACCTCAACCTCGCCCCCGTCGCCGTCTCCTCCGCTCGATTCCCCTTCCGGCACCAGTTCCCGGTTTTCCCCGGCGCGGTGCCGGCGGCGAACCAGGTTATGTACTTCGACGCCGTCCTACGCGCCGGCATGGCCGGTCCACGTGGCTTCGCGTTTGGCTACAATCCTCATCCCGTCGCGGCGAGTGAGTACCACGCGACGACGAGCGACTCGGACTCGTCCTCCGTTATCGATCTGAATCATAACGAAGGCGTTGTTAAGGGGAACGGTTCTAGAATGTTCGATCTCGACCTTAACCATCCTCCTCCACATGAGATCGCTTGA 660 0.6242 MAPRDKTSAVKPSGNAGVKDLHFRGVRKRPWGRFAAEIRDPAKKTRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPSENFKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPVAVSSARFPFRHQFPVFPGAVPAANQVMYFDAVLRAGMAGPRGFAFGYNPHPVAASEYHATTSDSDSSSVIDLNHNEGVVKGNGSRMFDLDLNHPPPHEIA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0661 219 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Gso15g0661 219 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Gso15g0661 219 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gso15g0661 219 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gso15g0661 219 MobiDBLite consensus disorder prediction 73 109 - -
Gso15g0661 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 196 - -
Gso15g0661 219 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gso15g0661 219 MobiDBLite consensus disorder prediction 1 21 - -
Gso15g0661 219 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gso15g0661 219 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Gso15g0661 219 MobiDBLite consensus disorder prediction 80 100 - -
Gso15g0661 219 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Gso15g0661 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0661 Gso-Chr15 5933616 5934726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0661 1 133 AP2-EREBP Transcription Factor Family AT5G44210 53.147 7.52e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g0661 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0661 K09286 - gmx:100803173 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0661 15 5933616 5934726 Gso15g0661 15 5933616 5934726 ECH
Gso6g1990 6 35017632 35018496 Gso15g0661 15 5933616 5934726 ECH
Gso12g0964 12 11660243 11661268 Gso15g0661 15 5933616 5934726 ECH
Gso15g0661 15 5933616 5934726 Gso11g2632 11 42275715 42276877 GST