Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0660 ATGGCGCCGTCTTCTTCAGCTTCTGCTTCTCGTGAGGGACACTACAGAGGGGTTAGGAAGCGACCATGGGGACGCTACGCCGCAGAAATAAGAGACCCATGGAAGAAGACACGTGTCTGGCTGGGCACATTCGATACTCCCGAGGAGGCCGCCCTCGCCTACGATGGCGCCGCCCGCTCCCTCCGCGGTGCCAAGGCCAAGACCAACTTCCCTCCGGCGCCGCCCCTCTGCCTCGACCTCAACGTCCCTTCCTCCGATCACCGCTGGCCCCACCACGTCCCCCCCCGCAGCCTCGTCCTCAGCGACTTCCTCCACACCGCCGTTCTCAGAGATATCGACCCGCCCCAACAACCTTTCCCACCCGCCGCCGCAGTAGCTCACCGAAATCCCCACGGCGGAGCTATGCCCGTTGGCGGCGGGGTTCAGGTGATGGAGGGTTCTCCAACGGCGTCGTTTTTGGGGTTCGTTAGGCGCGGCATCCCCATCGACTTGAACGAACCTCCACCCATGTGGCTATGA 519 0.6378 MAPSSSASASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPPLCLDLNVPSSDHRWPHHVPPRSLVLSDFLHTAVLRDIDPPQQPFPPAAAVAHRNPHGGAMPVGGGVQVMEGSPTASFLGFVRRGIPIDLNEPPPMWL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0660 172 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 161 - -
Gso15g0660 172 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Gso15g0660 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 161 - -
Gso15g0660 172 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Gso15g0660 172 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Gso15g0660 172 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Gso15g0660 172 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Gso15g0660 172 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Gso15g0660 172 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Gso15g0660 172 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0660 Gso-Chr15 5915887 5916956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0660 5 172 AP2-EREBP Transcription Factor Family AT1G28360 50.000 7.45e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g0660 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0660 - - gmx:100802655 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0660 15 5915887 5916956 Gso15g0660 15 5915887 5916956 ECH
Gso15g0660 15 5915887 5916956 Gso11g2944 11 45175777 45176795 GST