Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0657 ATGTCTATCCCCGATTCTCCCTTCGCCGAAGATGTCGAAATCGATCCATCCCTTGACGACGACGACGAAGAAGAAGAAGAAACAGAGGAGGAGGAGGAGGAGGAGGAAGAAGTCGAAGAGGAGGAGGTCGAGGAAGAAGAAGAAGTGGAGGAGGAAGAAGTAGAAGAGGAAGAGGTTGAGGAAGAACTGGAAGAGGAGGAAGTAGAAGAGATAGAGGTGGAGGAAGAACTGGAAGAGGAGGAAGTAGAAGAGATAGAGGTGGAGGAAGAACTGGAAGAGGAGGTAGTAGAAGAGATAGAGGTGGAGGAAGAAGAAGAGGAGGGGGAACAAGGAGAAGAACAACAAGTAGAAGAAATGGAGGAGGAAGAGGAAGAAGAAGTCGAAGAGGAGGAGGTGGAAGAGGAAGAAGAAGAGGAACAACAACAACAGCAGCAAGAAGCAGTGGAGGAGAAGAAGGAAGAGCAACAACAGCAACACCAAGCAGAAGCAGCAATGGAGGAACAAGAAGAAGTGCCAATGGAGGAGAAGGAGGAGGACAAACCGGCGGTGCCAGGTTCTCCACTCGATGCGGATAAGGATCGCAAAGATTACGGCCAACATATGGAGTTTGAGGGGCAAGACAAAAACTTGGGACCAGTTTCTTCTGTGGCTGAAAACCCTGAAGTAATGCCACCATCTAGTATGCATTGCATGGAAGAGAATAATGTCATGCTCAAAAAAAGTGACATACCTACATTGAAAAAGGAAGAGCTTCCCCTGAAATATGAAATTTCAAGTCATCCAAAATCAAGAGAAAATCTGACTTCTGTTGAAGTTTGCAGAAGTCAAGGATTAGATGTTGAAGTTGAAAATGATGGATCCCTTCTGCAGAAGAAAACATTTAGAGGATACTGTGTGCCAGGTTGCAATAGCAAAGCTAATTTATGTGGTGACAATAATATTGATTCCAGGGCCAGGGCCACCAAGTCATCTAGTGATACTGTACAAGATATGGTTATTGGCCCCCTACCGAGAGATTGCCTTGTTGAGGATTCTAATGGTGGTCAGAATTCTAGAAACAAAATCATGCTGTCGGAGATGGAGTCAAGGGATGATGCGAAACAAATGACATCAAGGACTAGAAATCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAACGCCCCAGAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGGGGACAATACTGACCAGGAAGCTGAAGCAGACTCAGTTTCTACTTATCAGAAGAGACAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATCCAGGATGAATGAGCAAGAAGCAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAAGTTTCCGCCGAGGGACAACTTGTTTCCAGATAATAGATTTCCATTTAGTGCATCAGACAATTATTTGAGCCCAAATCTTTCTTTGAATTCAACCCGTGCAGATGGAATGGCTACTCCTCGTAACCAACATATGTACAAAGGATATACTTCCACACTTTTGAGCCATTTGCCGAATTCGAGCCTGGTTACTCAATTTGCAGCTTCAAGTATGTCACTCTCCCACCGGATTCTAGCTCAATCAGGACGTTCGCTGCCTTTTAGTTCATCTTTAGGGGCTAGTAATGTGGATTCTCTAAAGTTTTTGAACACTGACAAAGAATATCTCACATCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAAGATTTTTCTCTTGTTAGTTCGTCTAGGGTTCCATCATATCCTGCTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTTCCCTTTCGACCATCTTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAGGCTTCCCTTTTAATTCATGGATCAAATGTGCAGGCTTCATCACAGGTTCGGACATATGGTGATTCTGCTGTAGTTGGGAAACACATGTCCAATTTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTGTGAAAATGAGCCAAATAAAAATTGTCTTCCTCATGAAAAAGATTGTCTTCCACCTGAAACAGAGATAACATCAGGAACTTATCAAGGTAAAATGGGCATGGGACAACATACCTTTGGTGTTGCAGATAGTACAAAAAATGAGAGAGATGTGACCGAGTGTGATGCTAGACGTCATGGTGAAGGATCAGGGCATAAAAAGAAGAGAGTAGACAGGGATAAGAAAAATCATGAAATGGATGGCGACTTTCAGATTGATGGCAGCATTCAGAAGGAATCAAAGGCATTAAAATTTTTTCGCGCAGCTCTTGTTGATCATGTTAAAGAGTTGTTAAAACCAGCTTGGCACGAGGGTCATCTTAGCAAGGATGCACACATTATGATAGTCAAAAAATCAGTTGACAAGGTTGTTAGCACCTTGGAACCCCATCAGATTCCGATCATGGATACTGCTAAGCAATATGTTTCTTCAAGTCAGGTGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAATATTGA 2634 0.4188 MSIPDSPFAEDVEIDPSLDDDDEEEEETEEEEEEEEEVEEEEVEEEEEVEEEEVEEEEVEEELEEEEVEEIEVEEELEEEEVEEIEVEEELEEEVVEEIEVEEEEEEGEQGEEQQVEEMEEEEEEEVEEEEVEEEEEEEQQQQQQEAVEEKKEEQQQQHQAEAAMEEQEEVPMEEKEEDKPAVPGSPLDADKDRKDYGQHMEFEGQDKNLGPVSSVAENPEVMPPSSMHCMEENNVMLKKSDIPTLKKEELPLKYEISSHPKSRENLTSVEVCRSQGLDVEVENDGSLLQKKTFRGYCVPGCNSKANLCGDNNIDSRARATKSSSDTVQDMVIGPLPRDCLVEDSNGGQNSRNKIMLSEMESRDDAKQMTSRTRNLSPSAEIKDGNKRPRIICDFFAKGWCIRGSSCSFLHIKDTGDNTDQEAEADSVSTYQKRQLKVEEGVRENVERSRMNEQEATPSWHPSQEKQKFPPRDNLFPDNRFPFSASDNYLSPNLSLNSTRADGMATPRNQHMYKGYTSTLLSHLPNSSLVTQFAASSMSLSHRILAQSGRSLPFSSSLGASNVDSLKFLNTDKEYLTSKSTFSGSGREDFSLVSSSRVPSYPAGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIHGSNVQASSQVRTYGDSAVVGKHMSNFNDDKSSVSSHNKFCENEPNKNCLPHEKDCLPPETEITSGTYQGKMGMGQHTFGVADSTKNERDVTECDARRHGEGSGHKKKRVDRDKKNHEMDGDFQIDGSIQKESKALKFFRAALVDHVKELLKPAWHEGHLSKDAHIMIVKKSVDKVVSTLEPHQIPIMDTAKQYVSSSQVKIAKLVNGYVNKYGKY* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0657 877 MobiDBLite consensus disorder prediction 436 451 - -
Gso15g0657 877 SMART c3hfinal6 388 413 IPR000571 GO:0046872
Gso15g0657 877 MobiDBLite consensus disorder prediction 1 197 - -
Gso15g0657 877 MobiDBLite consensus disorder prediction 744 783 - -
Gso15g0657 877 MobiDBLite consensus disorder prediction 359 383 - -
Gso15g0657 877 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 392 411 IPR000571 GO:0046872
Gso15g0657 877 SUPERFAMILY CCCH zinc finger 387 411 IPR036855 GO:0046872
Gso15g0657 877 MobiDBLite consensus disorder prediction 144 166 - -
Gso15g0657 877 ProSiteProfiles Zinc finger C3H1-type profile. 387 414 IPR000571 GO:0046872
Gso15g0657 877 Coils Coil 18 171 - -
Gso15g0657 877 MobiDBLite consensus disorder prediction 744 762 - -
Gso15g0657 877 MobiDBLite consensus disorder prediction 175 197 - -
Gso15g0657 877 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 167 876 - -
Gso15g0657 877 MobiDBLite consensus disorder prediction 12 143 - -
Gso15g0657 877 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 167 876 - -
Gso15g0657 877 MobiDBLite consensus disorder prediction 418 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0657 Gso-Chr15 5894587 5902256 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g0657 zf-CCCH 5.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0657 - - gmx:100819734 1416.36