Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0651 ATGGCCATGCCTCCCATTGATCGCTGGGACGCTGATAAAATACTTCGATTATATTTGCATGATTATATGGTCAAAAGGGGAATGCACAACGCCGCTGAGATTTTCAAGAAGGAAGCACAAGTTCCCGATCACCCTGTTTACATGAATTTTTTAGATTCAGTGGTTGATTCTCCAGATGGATTCCTGCATGAATGGTGGTCTATTTTCTATGAGGTATTTACCTCTAGGCAAGGGAAGGACCAAGAGACCGGGCAAGGGTCCTCTAGTAAGCTGGTCCCAATGATGACACAAAACGCAAGGAATGATGCTCCTCCTAAAATCCCTCAAATATCAATGAGTGAGCACAGAACTCCACAATTTCAAGTCAACTCCAGCTTTAACAACATGATGACTCAACCAGCCGTTTGTGTAATTCCTTCAATAATGTACAATAAAGAAGAGCGTCTTGGATATCTGCCCGAAAATGTTGAACCAAGTTTGCATGATGTTATAAATAGTAACCTGACGTTCTTGTCAGGGACTAGTTCAAATTATCCACTGCAAGATGTAGTAGGCAAGCAGGCCCAGAAGCAAGTCTTTAAGGATAGTGGAATTGGCATGAGTGTGGAGAGGGATATACCTAGGGACCCACTGGATGTAATGCAAAAATCAATGCTTCCTTTAGATGGACTTCATGAAACAAAAGCCAATGAAGCTCTCAATATAGTACCACTAAATGGATGGCCAATAAATAACCAAGTACTAACTTCATCTTTGCAACCACCAAATTGTCGACAGAAGTGTCAAATGTTGAAAACGCAAAATCAGGATGCAATCCTTGCTCAAGCAATTGCAGGTACTTCAAAAAATCAGACTTCCACAGTTCCTGAAAACTCTAGCAAATGCAATACAACGAAGATTTCTGAGATTGAATCAAGTGATAAGGATAAGCAGATGATAAACCAAATGATTACAACTGTAGAACATCAACACCAGCAGGATCAACAAATTCAGGCGCAATCCCAGAATGTTGAGAATAACAAAAAAACAAAGACAACAGAATTCATAAGACCTAGAGAAAGTGCCCAGAACTGTGAGGATACAGCCAATGGAAAACCCATGGATGAAAATGTGGAGTCTTTCCTGTCTTTAGAAAATGAACATGCTGATCATAAAATTGCACCTTTCAGCAATCTGAAACGAACTTCAGCTACATGCAGAAATGAAAAGAAAGGTTTTTCTTTCGAAGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCTAGCCATTTTTCATCAGATGGAAAAGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAAATTTTGATTGTGTAACTACTACAGAAACACATTCACTTCTTGTTACAGATGTTAGGTTTAGATCAGGTTCAACTATCTTTGCAACTTCTTCCTTTGATAGATCTGTGAGACTATGGGATGCTGCCAGACCAACCAGTTCTCTGCTCAAACTTACTGGGCATGCCGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAAGTGGACCTTCTTTGCTCATGTGATAGCAACGATGTAATTCGACTGTGGAATATCAATCAAGGTGTTTGCATGCATATATCTAAGGGAGGTAGTAAACAGGTCAGGTTCCAGCCTTGTTTTGGGAAGTTTTTGGCTACTGCCACAGGAAATAATATCAAAATATTTGATGTGGAGACCGACAGTCTTCTGTACAATCTAGAGGGACATGTTAAAGATGTTCGTTCCATTTGTTGGGATAAAAATGGAAACTATGTTGCCTCCGTCAGTGAAGATAGTGCACGTATCTGGTCATCAGACGGACAATGCATAAGTGAATTGCATTCAACCGGAAACAAGTTCCAATCATGCATATTTCATCCGGAATATCATAACCTCTTAGTTATTGGTGGTTATCAGTCCCTGGAATTGTGGAGTCCCGCTGAGAGCAGTAAAACATGGGCTGTTCATGCTCACAAGGGATTAATTGCTGGACTAGCAGATTCTCCCGAAAATGAAATGGTTGCCTCAGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 2088 0.4047 MAMPPIDRWDADKILRLYLHDYMVKRGMHNAAEIFKKEAQVPDHPVYMNFLDSVVDSPDGFLHEWWSIFYEVFTSRQGKDQETGQGSSSKLVPMMTQNARNDAPPKIPQISMSEHRTPQFQVNSSFNNMMTQPAVCVIPSIMYNKEERLGYLPENVEPSLHDVINSNLTFLSGTSSNYPLQDVVGKQAQKQVFKDSGIGMSVERDIPRDPLDVMQKSMLPLDGLHETKANEALNIVPLNGWPINNQVLTSSLQPPNCRQKCQMLKTQNQDAILAQAIAGTSKNQTSTVPENSSKCNTTKISEIESSDKDKQMINQMITTVEHQHQQDQQIQAQSQNVENNKKTKTTEFIRPRESAQNCEDTANGKPMDENVESFLSLENEHADHKIAPFSNLKRTSATCRNEKKGFSFEEVGCLHSSKSKVLSSHFSSDGKVLASAGHEKKVFIWNMENFDCVTTTETHSLLVTDVRFRSGSTIFATSSFDRSVRLWDAARPTSSLLKLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRLWNINQGVCMHISKGGSKQVRFQPCFGKFLATATGNNIKIFDVETDSLLYNLEGHVKDVRSICWDKNGNYVASVSEDSARIWSSDGQCISELHSTGNKFQSCIFHPEYHNLLVIGGYQSLELWSPAESSKTWAVHAHKGLIAGLADSPENEMVASASHDHCVKLWK* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 695 IPR001680 GO:0005515
Gso15g0651 695 Pfam WD domain, G-beta repeat 496 532 IPR001680 GO:0005515
Gso15g0651 695 Pfam WD domain, G-beta repeat 451 488 IPR001680 GO:0005515
Gso15g0651 695 Pfam WD domain, G-beta repeat 664 695 IPR001680 GO:0005515
Gso15g0651 695 Pfam WD domain, G-beta repeat 577 612 IPR001680 GO:0005515
Gso15g0651 695 Gene3D - 256 551 IPR015943 GO:0005515
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 695 - -
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 488 - -
Gso15g0651 695 Pfam LisH 20 39 IPR006594 GO:0005515
Gso15g0651 695 Gene3D - 552 695 IPR015943 GO:0005515
Gso15g0651 695 CDD WD40 410 695 - -
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 536 - -
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 541 IPR001680 GO:0005515
Gso15g0651 695 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 695 IPR044716 GO:0003714
Gso15g0651 695 SMART WD40_4 407 446 IPR001680 GO:0005515
Gso15g0651 695 SMART WD40_4 614 653 IPR001680 GO:0005515
Gso15g0651 695 SMART WD40_4 535 571 IPR001680 GO:0005515
Gso15g0651 695 SMART WD40_4 574 612 IPR001680 GO:0005515
Gso15g0651 695 SMART WD40_4 449 488 IPR001680 GO:0005515
Gso15g0651 695 SMART WD40_4 492 532 IPR001680 GO:0005515
Gso15g0651 695 SMART WD40_4 656 695 IPR001680 GO:0005515
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 455 IPR001680 GO:0005515
Gso15g0651 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 488 IPR001680 GO:0005515
Gso15g0651 695 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Gso15g0651 695 SUPERFAMILY WD40 repeat-like 408 695 IPR036322 GO:0005515
Gso15g0651 695 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0651 Gso-Chr15 5794689 5803446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0651 432 611 U-box Gene Family AT2G33340 25.134 7.21e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso15g0651 WD40 0.0048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0651 - - gsj:114387334 1404.81