Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0646 ATGGAGAACAACCCTAGTTCATCCAGAGTGGAAAGAAAAATCATTGAGAGGAATAGAAGAAATCAAATGAAAGCTCTCTTCCGCGAACTCAACTCACTTGTGCCTCATCAAAGTTCAAAGGAGGCCATTTCACTGCCGGATCAGCTAGAAGAAGCCACAAACTACATAAAGAAATTACAGATTAATCTGGAGAAAATGAAGGACAAGAAGAACATGCTACTAGGAATTGAAAGGCCAAATGTGAGAATGAATAATGGTGGAAGGACCGTGCGGTTAAATTCTCCACGGATTGAGATCCAACAAATGGGTTCAGCCTTAGAGGTTGTTCTAATAACTGGGTTCGATTGTCAGTTTATGTTCAGTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTAGATGTTGTTAACGCCAGTTATAAAGTTATTGAAGGTGCAGTTTTCCATTCAATACACTGTCAGGACAGGGAATCTGCCAACGGAGCTGCGAGGATATCTGAGAGGCTAAAGAACTTCATCTATGATTCTAGCTATAGTGCTTTCTAA 543 0.4052 MENNPSSSRVERKIIERNRRNQMKALFRELNSLVPHQSSKEAISLPDQLEEATNYIKKLQINLEKMKDKKNMLLGIERPNVRMNNGGRTVRLNSPRIEIQQMGSALEVVLITGFDCQFMFSETIRVLHEEGVDVVNASYKVIEGAVFHSIHCQDRESANGAARISERLKNFIYDSSYSAF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0646 180 Gene3D - 1 85 IPR036638 GO:0046983
Gso15g0646 180 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Gso15g0646 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Gso15g0646 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 173 IPR015660 GO:0003700|GO:0006357
Gso15g0646 180 SMART finulus 13 65 IPR011598 GO:0046983
Gso15g0646 180 Coils Coil 49 76 - -
Gso15g0646 180 PANTHER TRANSCRIPTION FACTOR BHLH162 1 173 - -
Gso15g0646 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 74 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0646 Gso-Chr15 5752269 5753871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0646 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.889 4.73e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0646 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0646 - - gmx:100814407 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0646 15 5752269 5753871 Gso11g2650 11 42453990 42455643 GST
Gso7g1674 7 38745390 38750087 Gso15g0646 15 5752269 5753871 PCT
Gso15g0646 15 5752269 5753871 Gso7g1674 7 38745390 38750087 PCT