LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g0645	ATGGGGGAAGATGGTAATTCTTGGATTAGGAGGACAAATTTTTCACACACAGTGTGCCATCGTTTGGATCCTGCTAGATTAGGCTCTATTCCTATCAGTGTTCAGTCAGAGCAGAAATCAAGGCCTTCCTCAAAGGCTCAGAGACACCCTATGACATTCAAGCAGAGATCTTTGTCACCATTGCCTGAGACTTATCTTTCTGAGGCCTTCAGGGAAGCTAGACTTGAACAGAAGAGGTTCTCCACACCGAATCCCCGGAGGGAAAAGAGGATTATGGGGAAGTTGTTGAACAAGGATTCTCGGGAGACTAAGGAATCAAGTTCAAAGTCACCTTCGCGTAGTCCAAATAGGCAAGTGAAGTCAAAGAACCGCAAGGATTCAGCATGGACTAAGCTTTTGGACAATGGTGGAGGAAAGATTACTGCTGTGGAAACAGCTGAAGAGTGGAATGTTGACATGTCTCAGTTGTTTTTTGGCCTAAAGTTTGCTCATGGTGCACATAGTCGACTTTACCATGGTGTATATAAGGATGAGGCTGTTGCTGTTAAAATCATTATGGTACCCGAGGATGATGGAAATGGAGCTTTGGCTTCTCGATTAGAGAAACAGTTCATTAGAGAAGTCACCCTTTTATCTCGTCTTCACCATCAAAATGTTATAAAGTTCTCAGCAGCATGTAGAAAGCCACCGGTTTATTGTATTATCACAGAATATCTGGCGGAAGGATCCTTGAGGGCATATTTGCATAAATTGGAACACCAAACTATTTCTCTACAAAAGCTAATAGCTTTTGCTCTGGATATTGCTCGTGGAATGGAATATATACATTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGAGAATATCCTTATCAACGAAGACAATCACCTTAAAATTGCCGATTTTGGCATTGCATGTGAGGAAGCATCTTGTGACTTATTGGCTGATGACCCTGGCACCTACCGTTGGATGGCACCTGAGATGATCAAAAGGAAATCCTATGGGAAAAAGGTTGATGTCTACAGTTTTGGGCTTATCTTATGGGAGATGTTGACTGGAACGATACCATATGAGGATATGAATCCAATACAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGACCGATTATTCCATCAAACTGCCCTCCTGCAATGCGAGCTCTAATTGAGCAATGTTGGAGCTTGCAACCAGACAAGAGGCCTGAGTTCTGGCAGGTTGTTAAGATATTAGAGCAATTTGAATCTTCACTTGCCAGTGATGGAACCCTGAGCCTGGTGCCAAATCCTTGTTGGGATCATAAGAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCCTTGCACCAAAATAGTGGCCCCGTGCCTAAACCCAAATTCACATGA	1389	0.4291	MGEDGNSWIRRTNFSHTVCHRLDPARLGSIPISVQSEQKSRPSSKAQRHPMTFKQRSLSPLPETYLSEAFREARLEQKRFSTPNPRREKRIMGKLLNKDSRETKESSSKSPSRSPNRQVKSKNRKDSAWTKLLDNGGGKITAVETAEEWNVDMSQLFFGLKFAHGAHSRLYHGVYKDEAVAVKIIMVPEDDGNGALASRLEKQFIREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLAEGSLRAYLHKLEHQTISLQKLIAFALDIARGMEYIHSQGVIHRDLKPENILINEDNHLKIADFGIACEEASCDLLADDPGTYRWMAPEMIKRKSYGKKVDVYSFGLILWEMLTGTIPYEDMNPIQAAFAVVNKNSRPIIPSNCPPAMRALIEQCWSLQPDKRPEFWQVVKILEQFESSLASDGTLSLVPNPCWDHKKGLLHWIQKLGPLHQNSGPVPKPKFT*	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g0645	462	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	3	439	-	-
	Gso15g0645	462	Gene3D	Phosphorylase Kinase; domain 1	144	239	-	-
	Gso15g0645	462	SMART	serkin_6	156	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso15g0645	462	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	280	292	IPR008271	GO:0004672\|GO:0006468
	Gso15g0645	462	PRINTS	Tyrosine kinase catalytic domain signature	236	249	IPR001245	GO:0004672\|GO:0006468
	Gso15g0645	462	PRINTS	Tyrosine kinase catalytic domain signature	274	292	IPR001245	GO:0004672\|GO:0006468
	Gso15g0645	462	PRINTS	Tyrosine kinase catalytic domain signature	320	330	IPR001245	GO:0004672\|GO:0006468
	Gso15g0645	462	PRINTS	Tyrosine kinase catalytic domain signature	339	361	IPR001245	GO:0004672\|GO:0006468
	Gso15g0645	462	PRINTS	Tyrosine kinase catalytic domain signature	383	405	IPR001245	GO:0004672\|GO:0006468
	Gso15g0645	462	Gene3D	Transferase(Phosphotransferase) domain 1	240	426	-	-
	Gso15g0645	462	PANTHER	TYROSINE KINASE FAMILY PROTEIN	3	439	-	-
	Gso15g0645	462	CDD	STKc_MAP3K-like	163	412	-	-
	Gso15g0645	462	ProSiteProfiles	Protein kinase domain profile.	156	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso15g0645	462	MobiDBLite	consensus disorder prediction	31	60	-	-
	Gso15g0645	462	MobiDBLite	consensus disorder prediction	76	130	-	-
	Gso15g0645	462	MobiDBLite	consensus disorder prediction	30	60	-	-
	Gso15g0645	462	Pfam	Protein tyrosine and serine/threonine kinase	161	412	IPR001245	GO:0004672\|GO:0006468
	Gso15g0645	462	MobiDBLite	consensus disorder prediction	76	108	-	-
	Gso15g0645	462	SUPERFAMILY	Protein kinase-like (PK-like)	143	412	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g0645	Gso-Chr15	5741303	5744969	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g0645	1	462	MAP Kinase Kinase Kinase	AT5G58950	55.513	0.0	579

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gso15g0645		PK_Tyr_Ser-Thr	8e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g0645	-		-	gmx:547826	923.309

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso15g0645	15	5741303	5744969	Gso11g2651	11	42468977	42472620	GST
	Gso7g1673	7	38730604	38735107	Gso15g0645	15	5741303	5744969	PCT
	Gso15g0645	15	5741303	5744969	Gso7g1673	7	38730604	38735107	PCT