Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0625 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCCTTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCGTCAGATTTTCCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATATAGTCCAGCAGCACACCTGTTTCTCTTTTTGGTGCAATGGACAGACTGCAATCTTGCCGGAGCCCTTGGACTGTTAAGAATCCTAATATACAAGGTGTATGCGGATGGGACAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATCAGGGAATTCTATGCGGTCATATATCCCTCTTTATTGCAACTGCAAAAAGGTGTAACAGATACAGAGGATACAAAACAGAAGGCTGTATGCATGGAGAGGTATCGCAAGAGAGATGATGAGGAGCACAGACAACCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCGACTGCAACCATGTCATGTGCCTGAAATGTTATCACGAATGGAGGACAAGATCACAATCATGCCCTTTTTGCCGTGACAATCTTAAGAGAGTAAACTCGGGTGATCTCTGGGTGTTCACTGACAATAGGGATGTAGTAGACATGGCAACAGTGACAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGGTCATTCCAGACTTTCTCTTTGACACATATGACTCTCACCTAAGATGA 744 0.4301 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYADGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDTKQKAVCMERYRKRDDEEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDNLKRVNSGDLWVFTDNRDVVDMATVTRENLRRLFMYIDKLPLVIPDFLFDTYDSHLR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0625 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Gso15g0625 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Gso15g0625 247 SMART ring_2 151 188 IPR001841 -
Gso15g0625 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Gso15g0625 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Gso15g0625 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Gso15g0625 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 247 - -
Gso15g0625 247 SUPERFAMILY RING/U-box 140 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0625 Gso-Chr15 5568875 5572449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0625 143 192 C3H Transcription Factor Family AT5G41350 42.593 7.20e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0625 K25840 - gmx:100789769 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0625 15 5568875 5572449 Gso11g2671 11 42655367 42659269 GST
Gso7g1656 7 38571056 38574965 Gso15g0625 15 5568875 5572449 PCT
Gso15g0625 15 5568875 5572449 Gso7g1656 7 38571056 38574965 PCT