Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0621 ATGACTTGTGGCTGCTTTGGAGCCAAATCGATAAAGGCAAAACGCCCTTCTTATGTTCCTGGTGAAATTGATGGCTATCCGCTAGATAATGTCAGGCAATTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATAATCCAAACAATAAGATAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACATTAAGAGATGGAAGGCATATAGCAGTGAAGACTCTCTCAGTTTGGTCAAAGCAGGGAGTTCGCGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTGAACATCCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGCCGTACATTAGTCTATGAGTATGTGGAAAATGGAAGCCTTAATAGTGCCCTACTTGGCACAAGGAATGAAAACATGAAACTAGACTGGAGAAAAAGATCTGCTATTTGTCTTGGTACTGCTAAGGGTCTTGCATTTCTTCATGAAGAACTTTCACCACCTATTGTACACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGATTTCAATCCCAAAATAGGTGATTTTGGGCTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAGAAGCAGTGCCAGAAGGACAAACGGGGGAGGATCACACAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAAGAGAGGAAATTGTTGGAGTTTGTAGATCAAGACATGGAAGAATTTCCTGAGGAAGAGGTAATTAGGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAGCAGCAAATAGAAGGCCTTTGATGATACAAGTTGTTGATATGCTATCCAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTCTTCACAAATGAAGGAGAATCCTCTAGAAATAACTCAAACCCTGTCTCTTCATTTATTACTATTACTCAAGTGACCCCACGGTAA 1083 0.3989 MTCGCFGAKSIKAKRPSYVPGEIDGYPLDNVRQFSDKELRLATDNYNPNNKIGRGGFGTVYQGTLRDGRHIAVKTLSVWSKQGVREFLTEIKTLSNVEHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENMKLDWRKRSAICLGTAKGLAFLHEELSPPIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLILEIISGRSSARRTNGGGSHKFLLEWAWQLYEERKLLEFVDQDMEEFPEEEVIRYMKVALFCTQSAANRRPLMIQVVDMLSKAIQLNEKELTAPGFFTNEGESSRNNSNPVSSFITITQVTPR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0621 360 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Gso15g0621 360 Pfam Protein kinase domain 46 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0621 360 ProSiteProfiles Protein kinase domain profile. 46 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0621 360 Gene3D Phosphorylase Kinase; domain 1 22 121 - -
Gso15g0621 360 PANTHER - 1 345 - -
Gso15g0621 360 PIRSF ILK 11 262 - -
Gso15g0621 360 PIRSF ILK 290 327 - -
Gso15g0621 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gso15g0621 360 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Gso15g0621 360 SMART serkin_6 46 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0621 360 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Gso15g0621 360 CDD STKc_IRAK 52 319 - -
Gso15g0621 360 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0621 Gso-Chr15 5511709 5515676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0621 34 336 Receptor kinase-like Gene Family AT1G56120 51.485 3.27e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso15g0621 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0621 - - gmx:100809588 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0621 15 5511709 5515676 Gso11g2675 11 42712871 42723510 GST
Gso7g1653 7 38529567 38534489 Gso15g0621 15 5511709 5515676 PCT
Gso15g0621 15 5511709 5515676 Gso7g1653 7 38529567 38534489 PCT