Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0607 ATGGATTCATCATCTTCAGGATCTCAGTTATCTCAGCACCCACAACTCCCACCGGGTTTTCGATTCTACCCCACAGATGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTTTCCATCATCGCCGAGGTTGATCTCTACAAGTTCGACCCATGGGAACTCCCAAGTAAAGCAACTTTTGGTGATCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGTCAAGGCCTAACAGAGCTGCTTCTTCTGGGTATTGGAAAGCAACCGGAACTGACAAGCCCATACTTGCATCTCATGGCCACCACCACAAAGTTGGAGTCAAGAAATCACTTGTTTTCTATGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGCAGATAGCAACTCAAATTCTAGCTCAAAACCACCTTCTATGGCTTCAGATCATGCACAGAGTTGCAAGAAAAATTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTACCAACCTGCCAAGGTTACCTTTGGTGGAGCAGAATAAGGAGCTTTCTATGCTACCAATGAGGTCCACTTTGTCAATGGCTAATAATAACACCTCTCAGGATTCCAAACCCACGTCTTCTATTAGCACAAGTTATGGGCCCCTTGGAGTAGAAAATGATGATAACTTATTTGATGGAATCTTAGGAGTTGATCATCAGAGCATGCAGCATGATGTTTCTGATTCCCAACAAGTGTCTTCAAAGGGAAACTTCCCTATGAAAAGAGAACTTTCGTCACAGTACTTTTGGAATGACACAGGGTCATCCTCTTCAAGCAGGAGATTCCACTGTGATCTTAATTATGCTGGAAGCAGCACTGTTGAGGAAGACAATTCCTTCGTTTCTCTGCTTAGCCACCTTTCACAGAACACAACATCGTTTCACCCAAATGCGCTTCTTGGCCCTATTGGTAATGGAGTATTGAGGCAACAGTTTCAACTTCCAAGCATGAATTGGAATACTTAG 1065 0.4385 MDSSSSGSQLSQHPQLPPGFRFYPTDEELVVHYLKRKADSVPLPVSIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGSRPNRAASSGYWKATGTDKPILASHGHHHKVGVKKSLVFYGGKPPKGVKTNWIMHEYRLADSNSNSSSKPPSMASDHAQSCKKNSLRLDDWVLCRIYKKSNSTNLPRLPLVEQNKELSMLPMRSTLSMANNNTSQDSKPTSSISTSYGPLGVENDDNLFDGILGVDHQSMQHDVSDSQQVSSKGNFPMKRELSSQYFWNDTGSSSSSRRFHCDLNYAGSSTVEEDNSFVSLLSHLSQNTTSFHPNALLGPIGNGVLRQQFQLPSMNWNT* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0607 354 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 325 - -
Gso15g0607 354 SUPERFAMILY NAC domain 11 184 IPR036093 GO:0003677|GO:0006355
Gso15g0607 354 PANTHER NAC TRANSCRIPTION FACTOR 56 2 325 - -
Gso15g0607 354 MobiDBLite consensus disorder prediction 146 165 - -
Gso15g0607 354 Pfam No apical meristem (NAM) protein 17 144 IPR003441 GO:0003677|GO:0006355
Gso15g0607 354 Gene3D NAC domain 25 189 IPR036093 GO:0003677|GO:0006355
Gso15g0607 354 ProSiteProfiles NAC domain profile. 16 184 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0607 Gso-Chr15 5393811 5395658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0607 13 354 NAC Transcription Factor Family AT1G61110 52.874 2.14e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso15g0607 NAM 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0607 - - gmx:100806369 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0607 15 5393811 5395658 Gso11g2993 11 45775995 45778347 GST
Gso7g1635 7 38283312 38285836 Gso15g0607 15 5393811 5395658 PCT
Gso15g0607 15 5393811 5395658 Gso7g1635 7 38283312 38285836 PCT