Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0605 ATGATGTCAAACGAGGAATTCGATTACTCGTACCTATCGGACGACGACGGAGACGTCGCCGATGACGATAAGCTCTGCATCGATCTGGACACAGTTATGAGCGTTCTGGACGAGGACGCCGATCCTTCCGAGAGTAGTCCTGAGGATTTTTCATTGAAAAATATTTCTCCCGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAATGGGAATTCTGTCCTTGAATGTGAACATGAAAACCAGGGACCTTCATCACAGACTTTTTCATCCCCAAATGCTCTTGCTGGTGGTTTCAGGGACTCCTCCATGCTTGAAAGTGATGAATTTTGCTTCACAGAAATGACAGGAGTTTCTAATTGTGAGACACCTGCTTACATTGCAGACAGAAGGTTCCCTGTTCCTGAGGCGAATTCAAGCAGCGTAGCTGTCTGTGGAGATAATTTGAACCTGCCTCTGTGGAAGTGTGAAAATGACAGCCAAATCAAGCATATAGGATATGATGCACAATCTGAACATGCTTCACATGGTTCTATCATTGAAAATATTGACTTAAATTTTGGAGATTATGAAACCTATATGGAAGACATTATTGGACTTTCTGGTAAACAGGAAAATGACTCGTGTACATCTTTTGAAATGTCGTTTGTGGATGCTGATAGATCTTCACGTGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTGTTACCAAGGTATGGATGATAGACCTGTTGTTGCCAACAGTTCTGGTTGTTTGCCTAATGGTGTTTATCCTCATGTGCGGAAAAATGAAGAAATGGTGAGGAACATGAAGGTTGCTAAAATGGAGTTATTTGCCGATACAAGTAGTGGCATGCATTCCAGCATTAATGGTGGAATATCTTTTCAAGATAGTCAATTTAGGTTTGCAGATAGTAAATATGCATCATCTTTTCCTGGTAATGTTCTATTTGAAGACAACGCGTCAGTGGAACTTTCAACTTGTGGTTCATATATTTCAAGAGAAGGCCAATCACTTACTGTCAAAGCCGAAAGAGATGAACTGATTATGCCTTACCAAAACTCTGTTCACAGTGATGATGCTGAGTTCAATGTAGGTCAAGAGATGAAACAACTACCTGGTATTTTCCCTGCTGTTGGATGTCAGGGTAATGATTTCTTTAAGTGCAGGGATAAGGTTACAATTGTAACAAGTCAGAAAGCCAAATATTATCAAGATGGTATTGATGGAGCTGCCAATAACTTTCAAGCAAACATGGGAAATTTGAATTTAAAACCATTAGACAAATCTTTGTATAATGCCCAGATATCTATTGCCAGTGGGAAGCAGTATAATTGTGTTATGAGTGAAGGAGAGGGCAAAGCAATTGAACATAGAAGTATTGATTCTCAGCTTTCAAAAGGAAGCATTGAGAGATCCATTATTGAGGATGATTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATAAGTCGATCAACAGTGCTTGGGAATTCCCTTATTACATCACAATCTTCTAGAGGTGGTTATACACATTCTTATATGGTGGGAAGTATGGGGCCCAAGGCGCGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAACCGAAGTCAGAGGTTAGTCCACCAGATGGTCTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGGGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCGACCATTGGTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAGTGCAACAATGCCCAAAAAAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAATGGCATAGTGAAGAACGAATCTAATATGTGTCAGGTGTCTAGTAGAAATCCAAACCAGAACATGAATTTGTTATTGCATGCGAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAATGGGCTGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAAACTCTCTGTCCTAGTATATCATGGAAGCAATCGAACCAAAGATCCTCATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAGTATCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAAAAGTGGAAAGAAGGGATTGGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTTTAAGATACGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAGTCCATCAAAAGGATACAGAAAGCTACAAGCTGTTTTAAAGACAATAATGTTACGTCGGACAAAAGCCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACCGGAGGAACGAGATTTCTATTCCAGACTAGAGGCTGATTCGCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCATGTGATCATCCTCTCCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCCTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATGTCTTTTAAAATGTTTAGAGGCATCATTGGCCCTCTGTGGTATCTGTAATGTTTCTATGCAGGACCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAATATCTTACTGGTGATGACAATCAGTGCCCTGCTCCAAACTGCAAAACTCGACTAAGCACGCCTTCAGTGTTTTCCAAAGTCACACTGAATAGTTCTTTTTCTGATCAGCCTTGTGATAATTTGCCTGATTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCTCAGGCTCAGCCATATGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCGTTGTCTAAACCACAATGCTTTGCTTCCCAAAACAATTCTGTGCAGAGCACTTCTGGGGAAAGTACCGATGGCCTTGGTAGCTCCTCGAGTGCTGACAGAATGAAATCCTTGAATGAAATTCCTGAGAGTCAAAATGTGCTTGAGGAGAGAAGCTCTAATAATTCAGTTGGTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATATACTTGAAGCATGTCTTAAGAATTCGTCGATCCAGTATAGAAGACTGGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTAAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACCGAGCACATCGAATTGGACAAACTCGTCCTGTCACAGTTTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTTGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTTATGATGTGA 3993 0.4112 MMSNEEFDYSYLSDDDGDVADDDKLCIDLDTVMSVLDEDADPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLECEHENQGPSSQTFSSPNALAGGFRDSSMLESDEFCFTEMTGVSNCETPAYIADRRFPVPEANSSSVAVCGDNLNLPLWKCENDSQIKHIGYDAQSEHASHGSIIENIDLNFGDYETYMEDIIGLSGKQENDSCTSFEMSFVDADRSSRVATSTDSSICQGSNVPNDFSDYYPSLNCYQGMDDRPVVANSSGCLPNGVYPHVRKNEEMVRNMKVAKMELFADTSSGMHSSINGGISFQDSQFRFADSKYASSFPGNVLFEDNASVELSTCGSYISREGQSLTVKAERDELIMPYQNSVHSDDAEFNVGQEMKQLPGIFPAVGCQGNDFFKCRDKVTIVTSQKAKYYQDGIDGAANNFQANMGNLNLKPLDKSLYNAQISIASGKQYNCVMSEGEGKAIEHRSIDSQLSKGSIERSIIEDDSDVCIIEDISHPAPISRSTVLGNSLITSQSSRGGYTHSYMVGSMGPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIGLILKERPPLLNKCNNAQKSELETLNLDADDDQLPENGIVKNESNMCQVSSRNPNQNMNLLLHAKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKAKLSVLVYHGSNRTKDPHELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAVSSKKRKCPPSSKSGKKGLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKATLLDGEPIISLPPKSVELKKVEFSPEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKRLCLLKCLEASLALCGICNVSMQDPPEDAVVSVCGHVFCNQCICEYLTGDDNQCPAPNCKTRLSTPSVFSKVTLNSSFSDQPCDNLPDYSGCEVEESEFCSQAQPYDSSKIKAALEVLQSLSKPQCFASQNNSVQSTSGESTDGLGSSSSADRMKSLNEIPESQNVLEERSSNNSVGVGEKAIVFSQWTRMLDILEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGCQSRLTVDDLKYLFMM* 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0605 1330 Pfam Helicase conserved C-terminal domain 1173 1272 IPR001650 -
Gso15g0605 1330 MobiDBLite consensus disorder prediction 1125 1148 - -
Gso15g0605 1330 Gene3D - 669 759 IPR038718 -
Gso15g0605 1330 Gene3D - 785 896 IPR038718 -
Gso15g0605 1330 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 483 1329 - -
Gso15g0605 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1329 IPR027417 -
Gso15g0605 1330 SMART helicmild6 1189 1272 IPR001650 -
Gso15g0605 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 895 IPR027417 -
Gso15g0605 1330 SMART ultradead3 571 872 IPR014001 -
Gso15g0605 1330 MobiDBLite consensus disorder prediction 750 785 - -
Gso15g0605 1330 CDD DEXDc_SHPRH-like 575 895 - -
Gso15g0605 1330 Pfam SNF2-related domain 595 972 IPR000330 GO:0005524|GO:0140658
Gso15g0605 1330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 685 857 IPR014001 -
Gso15g0605 1330 MobiDBLite consensus disorder prediction 750 771 - -
Gso15g0605 1330 SUPERFAMILY RING/U-box 1009 1068 - -
Gso15g0605 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1004 1066 IPR013083 -
Gso15g0605 1330 ProSiteProfiles Zinc finger RING-type profile. 1011 1054 IPR001841 -
Gso15g0605 1330 ProSitePatterns Zinc finger RING-type signature. 1030 1039 IPR017907 -
Gso15g0605 1330 Gene3D - 910 1329 IPR027417 -
Gso15g0605 1330 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1155 1325 IPR001650 -
Gso15g0605 1330 Gene3D - 545 639 IPR038718 -
Gso15g0605 1330 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 483 1329 - -
Gso15g0605 1330 CDD SF2_C_SNF 1175 1282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0605 Gso-Chr15 5361468 5370247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0605 465 1329 RAD5 or RAD16-like Gene Family AT1G61140 60.520 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso15g0605 SNF2_N 2.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0605 - - gmx:100805307 2422.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0605 15 5361468 5370247 Gso15g0605 15 5361468 5370247 ECH
Gso15g0605 15 5361468 5370247 Gso11g2693 11 42888243 42897611 GST
Gso7g1633 7 38231820 38240571 Gso15g0605 15 5361468 5370247 PCT
Gso15g0605 15 5361468 5370247 Gso7g1633 7 38231820 38240571 PCT