Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0580 ATGGGTGACGAACAACCGTCGACAACCTCAGTCTCCGGTCTCCGGCGAGTAATCGCGCTCCTCTCTTCATTGATCTCCCTCTCCCTCTCGATCAGAGTCTTCGCCGGAAAGTGGCAACTGATTCGGAGCAGGCTGGAGGAGCTCCACTCGGCCCTCGTTGCCGGCGATTCCACGTCACTCTCCGGCGAGCTCCCGGCAATAACGGGCACGGCGGAGGAGTGCCTCGAGCTGGCGCGGCGGTGCGCGGATCTGTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACTTGACATTGGGAAAGTTGGAAGCTCACGTGAAGAAGCTATCTGAGATATTCAAGAAGGGCGTGTCGATGCATGGCTACTCCGTAGTAGTTTCAAGGCCTGGTTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGACTTATTGACTCGAATGAAGGTTGGTGATTTGGGTATGAAGAAGCAAGCATTGGTGAACTTGCATGAGGTGGTTGTGGAGGATGACAAGTATGTGAAGTTGGTTGTTGAGGTTTCTGAGTTTGTTCACGTGTTGGTGGATTTTCTAGGTTCTAACGAGGTTGAGGTTGTCGAGGAGGCTGCTAAGGTTGTTTCTTTGGTTGCAGGGTTTGATTCTTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATCGCCCCTTTGATTCGGGTTTTGGAATGTGGGAGTGAGGTTGGGAAGGTTGGTGCTGCGAGGTGCTTGCAAAGGTTGACCGAGAATTCGGATAATGCGTGGTGTGTATCTGCTCATGGGGGTGTTACTGCTTTGTTGAGGATTTGTGAGAGTGTGGAAGAGTGTAAAGGGGAATTGGTTGGTCCTGCTTGTGGGGTGTTGAGGAATCTTTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACGTTTGTGAGTCTTGTGAGGTCTAAGGATGAAGCAGTTCAGGTGAGTTCTGTTGAGTTGATTCAGAACATTGCCTCTGGTGATGAGTTGGTTAGGCAGATGGTGATTAAAGAAGGAGGGATTCGTGTTCTTTTGCGTGTTTTGGATCCTAAGTGGTCTTGTTCGTCAAAAACAAGAGAGGTTGTGATGAGGGTTATTGATAATTTGTGTTTTTCTTCGCGTAGTTGTGTTAGTGTTTTGCTGAGTTATGGCTTTGTGGATCAATTGATGTATTATGTGAGAAATGGGGAGGCTTTGATTCAGGAGTTGGCACTGAAGGTGGCGTTTAGATTCTGTGAAACATCGGAGGAGGCTAAGAAGGCGTTGGGTGATGCCTGCTTCATGGCTGAGCTTGTGAAGTTTCTGAATGCGAAATCGTTTGAAGTTCGGGAAATGGCAGCAGAGGCACTCTCTAGCATGGTTATGGTGGCGAAAAATAGGAAGAGGTTTGTGCAGGATGACCGAAACATTTCTCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGCAATTCAGGTAATAAAAAGTTGTTGATCTCTATCTTGATGTCACTAACAAGTTGCAACAGTGGGAGGAAAAAAATTGTGAGTTCCGGGTATGCTAAAAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACCGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1692 0.4811 MGDEQPSTTSVSGLRRVIALLSSLISLSLSIRVFAGKWQLIRSRLEELHSALVAGDSTSLSGELPAITGTAEECLELARRCADLSYSGKLLMQSDLDLTLGKLEAHVKKLSEIFKKGVSMHGYSVVVSRPGFGACKDDMRFYLRDLLTRMKVGDLGMKKQALVNLHEVVVEDDKYVKLVVEVSEFVHVLVDFLGSNEVEVVEEAAKVVSLVAGFDSYKGVLVGAGVIAPLIRVLECGSEVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESVEECKGELVGPACGVLRNLCGVEEIKRFMVEEGVVSTFVSLVRSKDEAVQVSSVELIQNIASGDELVRQMVIKEGGIRVLLRVLDPKWSCSSKTREVVMRVIDNLCFSSRSCVSVLLSYGFVDQLMYYVRNGEALIQELALKVAFRFCETSEEAKKALGDACFMAELVKFLNAKSFEVREMAAEALSSMVMVAKNRKRFVQDDRNISLLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0580 563 SUPERFAMILY ARM repeat 144 545 IPR016024 -
Gso15g0580 563 SMART arm_5 255 298 IPR000225 GO:0005515
Gso15g0580 563 SMART arm_5 299 339 IPR000225 GO:0005515
Gso15g0580 563 SMART arm_5 172 213 IPR000225 GO:0005515
Gso15g0580 563 SMART arm_5 428 468 IPR000225 GO:0005515
Gso15g0580 563 SMART arm_5 214 254 IPR000225 GO:0005515
Gso15g0580 563 SMART arm_5 341 384 IPR000225 GO:0005515
Gso15g0580 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 353 IPR000225 GO:0005515
Gso15g0580 563 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 563 - -
Gso15g0580 563 Gene3D - 143 552 IPR011989 -
Gso15g0580 563 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0580 Gso-Chr15 5115096 5117284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0580 124 417 U-box Gene Family AT2G23140 25.000 3.61e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0580 - - gmx:100788707 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0580 15 5115096 5117284 Gso11g2719 11 43134416 43136794 GST
Gso7g1613 7 37952164 37954662 Gso15g0580 15 5115096 5117284 PCT
Gso8g0500 8 4600878 4603417 Gso15g0580 15 5115096 5117284 PCT
Gso15g0580 15 5115096 5117284 Gso7g1613 7 37952164 37954662 PCT
Gso15g0580 15 5115096 5117284 Gso8g0500 8 4600878 4603417 PCT