Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0573 ATGGGGAAAAAATCGAGTCCGGCGGAGGGGGAAGAAGCGGTGCCGGAGCATCTGCGGTGCAGCCGTACGGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAAAACCTAAAGCTGTGCGAGATTCACTACGTGCAAGCTCGGCGTCGGCAGCACAAGAAGACGCTGAAGCTTAAGAGAAAGAGGCAAAACGACGCCGTTGAGGTTCAGATTGGGGCCAAGCGGGACCGAAAATCGAGAGAGGCATTGGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGGGAGGTTGAGAAGAAGAAGAAGAAGCAATCGCAATTGAATTTGAATTTGCATTTGCATTTCAATCACGAGTTGAAGAAGGAACTGCCGAATGGGGTTATGGCTATTGCGTCCAATATGGCATCTTCTCGTTACTTCAGGTCCAAGAATGCTGAGAGGGGCTCTGTTAGTAAGTTGCAGGTTGTGCAGTGTGGACAAAGCATAAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAGTCTTGTAATGTGTTCAAGCTGCCAGAGAGAGTTTTTCTGCATGGAGTGCATTAAACAACGGTATTTTGCTACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGATTGCTTGTCAAGTCAATACGAAGAGAGTGAAAGTAAGGAATATTTGGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTGTGTATGCTCCTTCCTGTACTAAAACAAATAAAAGAAGACCATCATGTAGGCGTAGAAAAAACAGCAAAAATCAAAGGGAAAAGAACTTCTGATATTATCATCAAGCCTGTCGATTTTGTCTGCAACGAGAAAAATTACTGCAATTACTGCAAAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGTCTTTGCTTAAGCTGTTCTCAGGCATTAAGTCAAGGAAGCACCTCTGAAGAAATCAACTCTTCTATATCCAACCTACCTGACAAAATAAATGCATGCATTTTTAGTGAAGGTCACCTTTTGGATGATAAGGTCATTTCTAATGGCAATTTAACTGATACCTCAACATTAGTTGAGTGGACAAATTGTAATGGTGCTGACATTGTGTCATGCCCACCTACAAAGCTTGGTGATTGTGGTGATAGCCACCTTGATTTGAAATATGTCTTTCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAGAAGTTCAAGCTGCTCACTGTGTGTTGACAAAGATCATAAAACTAGCAGATACAAGCAGTTACCAGAAGCAGCTCAAAGAGAAGATTCTAATGATAATTTCTTGTTTTATCCTACAATTTTGGACATCAGTTGCAATCATTTTGAACACTTTCGGAAACACTGGGGAATAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCAAAGTATGCCAAACCTTAGTTGGGATCCACTGGTCATGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGATTAACGTTAGTCAGTACTTTACTGGGTCTCTTAAATGTCAACCTCAGAAAAATAATTGGCATGAGATGCTGAAACTTAAAGGATGGTTGTCTTCCCAACTATTCAAAGAACAATTTCCAGCTCATTTTGCTGAAGTAATTGATTCTCTTCCAATTCAAGAATACATGAATCCCTGGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCTCATGTTTATATTTCATATGGCTGTGCTGATGAAGAAGCTGATTCCGTGACAAATCTTTGTTACGACTCATATGATATGGTTAATATTATGGCACATACCATGGACATCCCTCTCTCTACAGATCAGCTTGCTAAAATAAGTAAGTTGTTGAAAAAACACAAAACTCTATGTCAGAAGGTGTCATCATCTAAAACTACTAGTGAGCATTCAGAAGACAGGGAACAAAATGAAATGCATGGTATGGTAAGAGAAGGAACTGACTTTCTAAGGAGAGTCAATAGAACAGCTTCCATCTCTACTGAAGCCAAACCGATATCTAATCAGAAGTTAGACACCAATATTTCTGATGATGAAGAATGTGGTTCCGATTCTGAAACTGAAAAGGCACAAAGCTCTTTACCTTTCCAAAGGAGAGTTCTAAGCACTGAAATGTCTCCAGATCATAATCCTAGAAATCCCTTTGAAAACTCAAACAGTGATAAAAGGAAGAAGTTTACTGAGAATTCTGGTGCTCATTGGGATGTCTTTCGAAGACAGGATGTGCCCAAGCTCTTAGAATACCTCAAAAGACACTCTGATGAATTTTCTTATAATAGTGAATGTCACGAGAAGATGGTTCATCCAATTCTGGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTACATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTCTCTGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCATAAAGCAAAAGGAGAAAAGCTGGAGGTGAAAAAAATGGCCCTTTATAGCATGAGTACAGCAATAGAAGAAATACGTGAGCTTACCTGCAAAACATGA 2853 0.4087 MGKKSSPAEGEEAVPEHLRCSRTDGRQWRCRRRVKENLKLCEIHYVQARRRQHKKTLKLKRKRQNDAVEVQIGAKRDRKSREALVNRRNQLELIRMVLQREVEKKKKKQSQLNLNLHLHFNHELKKELPNGVMAIASNMASSRYFRSKNAERGSVSKLQVVQCGQSIKKGRRKKCHWCQRSDSWSLVMCSSCQREFFCMECIKQRYFATQNEVKMACPVCRGTCTCKDCLSSQYEESESKEYLAGKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVEKTAKIKGKRTSDIIIKPVDFVCNEKNYCNYCKTPILDLHRSCLSCSYSLCLSCSQALSQGSTSEEINSSISNLPDKINACIFSEGHLLDDKVISNGNLTDTSTLVEWTNCNGADIVSCPPTKLGDCGDSHLDLKYVFPLSWIKEMEVKAEEIVCSYDFPETLDRSSSCSLCVDKDHKTSRYKQLPEAAQREDSNDNFLFYPTILDISCNHFEHFRKHWGIGHPVVVRDVLQSMPNLSWDPLVMFCTYLERSMTRYENNKDLLEACLDWFEVEINVSQYFTGSLKCQPQKNNWHEMLKLKGWLSSQLFKEQFPAHFAEVIDSLPIQEYMNPWSGLLNLAANLPQGSTKHDIGPHVYISYGCADEEADSVTNLCYDSYDMVNIMAHTMDIPLSTDQLAKISKLLKKHKTLCQKVSSSKTTSEHSEDREQNEMHGMVREGTDFLRRVNRTASISTEAKPISNQKLDTNISDDEECGSDSETEKAQSSLPFQRRVLSTEMSPDHNPRNPFENSNSDKRKKFTENSGAHWDVFRRQDVPKLLEYLKRHSDEFSYNSECHEKMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSECIQLIDEVRLLPEDHKAKGEKLEVKKMALYSMSTAIEEIRELTCKT* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0573 950 Coils Coil 936 950 - -
Gso15g0573 950 Pfam WRC 15 55 IPR014977 -
Gso15g0573 950 SMART cupin_9 589 913 IPR003347 -
Gso15g0573 950 PANTHER PROTEIN B160 11 949 - -
Gso15g0573 950 ProSiteProfiles JmjC domain profile. 608 913 IPR003347 -
Gso15g0573 950 ProSiteProfiles Zinc finger RING-type profile. 175 221 IPR001841 -
Gso15g0573 950 MobiDBLite consensus disorder prediction 729 795 - -
Gso15g0573 950 Pfam JmjC domain, hydroxylase 799 896 IPR003347 -
Gso15g0573 950 MobiDBLite consensus disorder prediction 756 783 - -
Gso15g0573 950 MobiDBLite consensus disorder prediction 690 714 - -
Gso15g0573 950 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
Gso15g0573 950 SUPERFAMILY Clavaminate synthase-like 482 934 - -
Gso15g0573 950 MobiDBLite consensus disorder prediction 695 714 - -
Gso15g0573 950 Coils Coil 81 108 - -
Gso15g0573 950 Gene3D Cupin 480 922 - -
Gso15g0573 950 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 949 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0573 Gso-Chr15 5067769 5073483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso15g0573 JmjC 1.4e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0573 K15601 - gmx:100802129 1909.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0573 15 5067769 5073483 Gso11g2724 11 43188624 43194546 GST
Gso7g1608 7 37870999 37877187 Gso15g0573 15 5067769 5073483 PCT
Gso8g0505 8 4671911 4678434 Gso15g0573 15 5067769 5073483 PCT
Gso15g0573 15 5067769 5073483 Gso7g1608 7 37870999 37877187 PCT
Gso15g0573 15 5067769 5073483 Gso8g0505 8 4671911 4678434 PCT