Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0560 ATGGCAGCGGCGACGATAATCTACTTTTATTTTTTTCTCTTCTCCTTCGTCTCTTTCCACCATTTATTGTTTTCTTTCGCAGCTAGTTCTAAGACCAGGATCACGCAGGGCGTCACGATCAGGGACAAAGAGCATGAAACATTGGTGTCAGAAGAGCTCAACTTTGCGATGGGTTTCTTCAGTTCCGACAACTCCTCTTCCCGCTACGTTGGAATTTGGTACGACAACATTCCCGGACCAGAAGTTATATGGGTCGCAAACCGCGACAAACCGATCAACGGCACCGGAGGAGCCATCACTATTTCCAATGACGGCAACCTCGTAGTCCTCGACGGAGCCATGAACCATGTTTGGTCCTCAAACGTTTCCAATATTAACAGCAACAACAAAAACTCCTCAGCATCGCTTCATGACGATGGCAACCTCGTTCTCACATGCGAAAAGAAAGTGGTTTGGCAAAGCTTCGAGAATCCAACGGATACATACATGCCCGGTATGAAGGTGCCAGTGGGTGGATTGAGCACTAGCCATGTCTTCACTTCATGGAAATCAGCCACGGATCCTTCAAAGGGAAACTACACTATGGGGGTGGATCCTGAAGGGTTACCTCAGATAGTGGTTTGGGAAGGGGAAAAAAGAAGGTGGAGAAGTGGGTATTGGGATGGTAGAATGTTTCAAGGGTTGTCCATCGCAGCAAGTTATCTTTACGGTTTCACGCTTAATGGGGACGGTAAAGGTGGTAGGTATTTCATATATAACCCGTTAAACGGCACGGATAAGGTGAGGTTTCAAATAGGGTGGGATGGATACGAGAGAGAGTTCAGGTGGAATGAGGATGAGAAGAGTTGGAGTGAGATTCAAAAAGGGCCTTTTCACGAGTGTGATGTTTATAACAAGTGTGGGAGTTTCGCGGCGTGTGATTTGTTAACGTTGTCCCCTTCTTCGGATTTAGTACCTGTTTGTACTTGCATACGAGGTTTTGAACCGAAGCATAGGGATCAGTGGGAAAAGGGGAACTGGTCGGGTGGGTGTACGAGGATGACTCCGCTCAAGGCTCAGAGGATTAATGTTACTTCTTCTGGGACTCAGGTTAGTGTTGGAGAGGATGGGTTCTTGGATCGTAGGTCTATGAAGTTGCCCGATTTCGCACGTGTGGTTGGCACGAATGATTGTGAGAGAGAGTGTTTGAGCAATGGTTCTTGTACGGCGTATGCCAATGTTGGATTAGGGTGCATGGTGTGGCATGGGGACTTGGTTGATATTCAACATTTGGAAAGTGGAGGGAACACATTGCACATACGCCTCGCTCATTCTGATTTAGATGATGTTAAAAAGAACAGGATTGTGATAATATCAACGATTGGGGCGGGGTTAATCTGTCTAGGAATCTTTGTATGGCTGGTCTGGAGATTCAAGGGAAAACTTAAAGTTCTGCCTACAGTTTCCTCAGTTTCTTGTTGCAAGAGTAGTGATGCACTACCAGTTTTTGATGCAAACAAGAGCAGAGAAATGTCAGCAGAATTTTCAGGATCAGCTGACCTTAGTTTGGAGGGGAACCAATTAAGTGGACCAGAATTTCCAGTTTTCAATTTTAGCTGCATTTCAATAGCCACAAACAATTTCTCTGAAGAAAATAAGCTTGGGCAAGGGGGCTTTGGCCCTGTCTACAAGGGAAAGCTTCCAGGCGGAGAACAAATAGCTGTTAAGAGGCTCTCAAGACGGTCTGGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAATTACAACACAGAAATTTAGTTAGATTAATGGGTTGCTCTATTCAAGGGGAGGAGAAGTTGCTGGCATATGAATACATGCCAAACAAAAGCTTGGATTGCTTTTTATTTGATCCTGTCAAACAAAAACAACTAGCTTGGAGAAGACGTGTTGAAATCATTGAAGGCATTGCAAGAGGATTACTTTATTTGCACCGGGATTCAAGACTTAGAATAATACATCGAGATTTAAAAGCGAGTAACATTTTGTTGGATGAAAACATGAACCCAAAAATATCAGACTTTGGCTTGGCCAGGATATTTGGTGGGAACCAGAATGAAGCCAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCCCCTGAATATGCAATGGAAGGTCTGTTTTCAGTAAAATCTGATGTATATAGTTTTGGTGTATTACTACTAGAGATTTTGAGTGGCCGCAGAAACACTAGCTTTCGTCACTCAGATGACTCAAGCCTCATAGGATATGCATGGCATCTTTGGAATGAACACAAAGCAATGGAGCTTCTTGATCCTTGCATTCGTGATTCTAGTCCTAGAAACAAGGCTTTGAGATGCATACACATAGGGATGCTATGTGTGCAAGATTCAGCAGCTCATAGGCCAAACATGTCTGCTGTGGTGTTGTGGCTGGAAAGTGAAGCAACAACTCTTCCCATACCTACGCAACCTTTGATTACTTCAATGAGGAGAACTGAGGACAGAGAATTTTACATGGATGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2571 0.4403 MAAATIIYFYFFLFSFVSFHHLLFSFAASSKTRITQGVTIRDKEHETLVSEELNFAMGFFSSDNSSSRYVGIWYDNIPGPEVIWVANRDKPINGTGGAITISNDGNLVVLDGAMNHVWSSNVSNINSNNKNSSASLHDDGNLVLTCEKKVVWQSFENPTDTYMPGMKVPVGGLSTSHVFTSWKSATDPSKGNYTMGVDPEGLPQIVVWEGEKRRWRSGYWDGRMFQGLSIAASYLYGFTLNGDGKGGRYFIYNPLNGTDKVRFQIGWDGYEREFRWNEDEKSWSEIQKGPFHECDVYNKCGSFAACDLLTLSPSSDLVPVCTCIRGFEPKHRDQWEKGNWSGGCTRMTPLKAQRINVTSSGTQVSVGEDGFLDRRSMKLPDFARVVGTNDCERECLSNGSCTAYANVGLGCMVWHGDLVDIQHLESGGNTLHIRLAHSDLDDVKKNRIVIISTIGAGLICLGIFVWLVWRFKGKLKVLPTVSSVSCCKSSDALPVFDANKSREMSAEFSGSADLSLEGNQLSGPEFPVFNFSCISIATNNFSEENKLGQGGFGPVYKGKLPGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLAYEYMPNKSLDCFLFDPVKQKQLAWRRRVEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEHKAMELLDPCIRDSSPRNKALRCIHIGMLCVQDSAAHRPNMSAVVLWLESEATTLPIPTQPLITSMRRTEDREFYMDGLDVSNDLTVTMVVGR* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0560 856 SMART serkin_6 541 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0560 856 ProSiteProfiles Protein kinase domain profile. 541 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0560 856 PIRSF SRK 3 856 IPR024171 GO:0004674
Gso15g0560 856 Pfam Protein tyrosine and serine/threonine kinase 544 808 IPR001245 GO:0004672|GO:0006468
Gso15g0560 856 CDD B_lectin 46 158 IPR001480 -
Gso15g0560 856 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Gso15g0560 856 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 12 856 - -
Gso15g0560 856 ProSiteProfiles Bulb-type lectin domain profile. 31 157 IPR001480 -
Gso15g0560 856 CDD STKc_IRAK 547 808 - -
Gso15g0560 856 Gene3D Transferase(Phosphotransferase) domain 1 617 819 - -
Gso15g0560 856 SMART ntp_6 366 435 IPR003609 -
Gso15g0560 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 222 IPR036426 -
Gso15g0560 856 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 856 - -
Gso15g0560 856 SUPERFAMILY Protein kinase-like (PK-like) 526 839 IPR011009 -
Gso15g0560 856 Gene3D - 25 155 IPR036426 -
Gso15g0560 856 CDD PAN_AP_plant 368 436 - -
Gso15g0560 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Gso15g0560 856 SMART blect_4 39 158 IPR001480 -
Gso15g0560 856 Pfam S-locus glycoprotein domain 215 330 IPR000858 GO:0048544
Gso15g0560 856 Pfam D-mannose binding lectin 82 183 IPR001480 -
Gso15g0560 856 ProSiteProfiles PAN/Apple domain profile. 366 436 IPR003609 -
Gso15g0560 856 Pfam PAN-like domain 367 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0560 Gso-Chr15 4957791 4961589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0560 489 824 Receptor kinase-like Gene Family AT4G23230 57.864 2.31e-130 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso15g0560 PK_Tyr_Ser-Thr 8.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0560 - - gmx:106794169 1719.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0560 15 4957791 4961589 Gso11g2735 11 43281000 43284775 GST
Gso7g1604 7 37834843 37839219 Gso15g0560 15 4957791 4961589 PCT
Gso8g0507 8 4701672 4706376 Gso15g0560 15 4957791 4961589 PCT