Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0559 ATGCCAGGTTTCTTATTCTTCCTCTTTTGCTTCTTCTTTGCATCATCACAACACATCGCAATTTCATTCTCCACAGACACCTTAAGCTCAACACAAATTCTTCTAACCAACCAAACCCTCGTATCACCAAGCCACATCTTCGCTCTGGGCTTCTTTCCGGGGACCAATTCCACATGGTACTTAGGCGCATGGTACAACAACATCACCGACGACAAAACCGTAGTATGGGTGGCCAATAGAGACAACCCTCTCGAGAATTCCAGTGGTTTTCTAACCATCGGAGAAAACGGAAACATCGTCCTCAGAAATCCATCAAAGAAGAACCCCGTTTGGTCCTCCGACGCAACCAAAGCCAACAACCCCGTGCTTCAGCTTTTGGACACAGGAAACCTAATTCTCAGAGAAGCAAACATAACCGACCCGACAAAGTATCTCTGGCAAAGCTTCGATTACCCAACAGACACACTCTTACCCGGCATGAAAATGGGGTGGAACCTAGACACTGGCGCGGAGAAACACTTAACATCGTGGAAAAACACAGGGAGCGACCCTTCAAGCGGAGATTACTCTTTCAAGATAGACACACGTGGAATACCAGAAATTTTCTTAAGTGATGATCAAAACATTGCATACAGAAGTGGCCCTTGGAATGGTGAGAGATTCAGTGGGGTGCCAGAGATGCAACCCGACACAGATTCTATAACGTTTGATTTTTCTTATGATAAACATGGTGTGTACTATTCGTTCTCCATTGGGAACCGTTCGATTTTGTCGAGGCTGGTTGTGACTTCGGGTGGTGAACTTAAGCGTCTTACTTGGGTGCCAAGTAGCAAAACTTGGACCACGTTTTGGTACGCGCCTAAGGATCAGTGTGACGGCTACAGAGCGTGTGGTCCATATGGGTTGTGTGACTCCAACGCTTCGCCGGTTTGCACGTGCGTGGGAGGGTTCAGGCCGAGGAACCAGCAGGCGTGGAATTTGAGAGATGGGTCTGATGGGTGTGAGAGGAAGACGGATTTGGATTGTGGGAGTGACAAGTTTTTGCATGTCAAGAACGTGAAGCTGCCGGAGACAACCTATGTGTTTGCGAACGGGAGCATGAACCTAAGGGAGTGTCAGGATTTGTGCCTCAGGGATTGTTCTTGCACTGCTTATGCCAACATTCAGATCACAAACGGAGGAAGCGGATGCGTGACGTGGAGTGGTGAACTCGAAGATATGAGGCTGTATCCTGCGGGTGGACAACATCTCTATGTTAGATTAGCAGCTTCTGACGTAGATGACATAGTAGGTGGCTCTCACAAGAAAAACCATACAGGTGAGGTTGTAGGAATTACAATTTCTGCAGCTGTAATAATTTTGGGATTGGTTGTCATTTTCTGGAAGAAGAGGAAACTGTTCAGTATATCAAATGTTAAGACAGCCCCTAGAGGTTCTTTCCGAAGAAGTCGGGATTTGCTAACGAGTGAGAGGATGTTTTCAACTAATAGAGAAAACTCAGGAGAAAGGAACATGGATGACATAGAGTTGCCAATGTTTGATTTTAATACCATAACAATGGCCACAGACAACTTCTCTGAAGCAAATAAACTTGGACAAGGAGGCTTTGGTATTGTTTACAGGGGCAGGTTGATGGAAGGCCAAGATATTGCTGTCAAGAGGTTATCAAAAAACTCCGTGCAAGGAGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAGGCTTCAACATCGAAATCTTGTTCGGCTCTTTGGTTGCTGCATTGAGATGGATGAGAAGTTGCTAGTGTATGAGTACATGGAAAATAGAAGCCTTGATTCTATTTTGTTTGACAAAGCCAAAAAACCCATATTGGATTGGAAAAGACGCTTCAACATTATATGTGGCATAGCTAGAGGGCTACTTTATCTGCACCATGATTCCAGATTTAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGATAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGACTTTTTGGCACGAATCAGACAGAAGCAAACACATTGAGAGTTGTTGGAACATATGGCTATATGTCCCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTAGTGCTGGAAATTATAACTGGGAAAAAAAATAGAGGATTCTATTACTCAAATGAAGATATGAATCTTCTAGGGAATGCATGGAGGCAGTGGAGAGATGGCAGTACATTGGAACTCATTGATTCATCCATTGGCGATTCATGTTCACAATCTGAAGTTCTTAGATGCATACACGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGTTATTGATGCTGAGTAGTGAATCCGCAATAATGCCACAACCCAGAAACCCTGGGTTTTCCATAGGGAAGAATCCTGTGGAGACCGATTCTTCTTCAAGCAAGAAAGATCAATCATGGAGTGTGAACCAAGTCACAGTCACATTACTAGATGCTAGGTAG 2535 0.441 MPGFLFFLFCFFFASSQHIAISFSTDTLSSTQILLTNQTLVSPSHIFALGFFPGTNSTWYLGAWYNNITDDKTVVWVANRDNPLENSSGFLTIGENGNIVLRNPSKKNPVWSSDATKANNPVLQLLDTGNLILREANITDPTKYLWQSFDYPTDTLLPGMKMGWNLDTGAEKHLTSWKNTGSDPSSGDYSFKIDTRGIPEIFLSDDQNIAYRSGPWNGERFSGVPEMQPDTDSITFDFSYDKHGVYYSFSIGNRSILSRLVVTSGGELKRLTWVPSSKTWTTFWYAPKDQCDGYRACGPYGLCDSNASPVCTCVGGFRPRNQQAWNLRDGSDGCERKTDLDCGSDKFLHVKNVKLPETTYVFANGSMNLRECQDLCLRDCSCTAYANIQITNGGSGCVTWSGELEDMRLYPAGGQHLYVRLAASDVDDIVGGSHKKNHTGEVVGITISAAVIILGLVVIFWKKRKLFSISNVKTAPRGSFRRSRDLLTSERMFSTNRENSGERNMDDIELPMFDFNTITMATDNFSEANKLGQGGFGIVYRGRLMEGQDIAVKRLSKNSVQGVEEFKNEVKLIVRLQHRNLVRLFGCCIEMDEKLLVYEYMENRSLDSILFDKAKKPILDWKRRFNIICGIARGLLYLHHDSRFRIIHRDLKASNILLDSEMNPKISDFGMARLFGTNQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIITGKKNRGFYYSNEDMNLLGNAWRQWRDGSTLELIDSSIGDSCSQSEVLRCIHVGLLCVQERAEDRPTMSSVLLMLSSESAIMPQPRNPGFSIGKNPVETDSSSSKKDQSWSVNQVTVTLLDAR* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0559 844 CDD B_lectin 31 152 IPR001480 -
Gso15g0559 844 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Gso15g0559 844 SMART blect_4 31 152 IPR001480 -
Gso15g0559 844 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Gso15g0559 844 SMART ntp_6 342 421 IPR003609 -
Gso15g0559 844 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Gso15g0559 844 Pfam Domain of unknown function (DUF3403) 798 844 IPR021820 GO:0004674
Gso15g0559 844 SMART serkin_6 525 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0559 844 PIRSF SRK 1 844 IPR024171 GO:0004674
Gso15g0559 844 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Gso15g0559 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 218 IPR036426 -
Gso15g0559 844 MobiDBLite consensus disorder prediction 815 832 - -
Gso15g0559 844 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 843 - -
Gso15g0559 844 CDD STKc_IRAK 531 796 - -
Gso15g0559 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Gso15g0559 844 Gene3D Phosphorylase Kinase; domain 1 499 600 - -
Gso15g0559 844 Pfam PAN-like domain 342 407 IPR003609 -
Gso15g0559 844 PANTHER - 18 843 - -
Gso15g0559 844 Pfam D-mannose binding lectin 73 178 IPR001480 -
Gso15g0559 844 Pfam Protein tyrosine and serine/threonine kinase 528 793 IPR001245 GO:0004672|GO:0006468
Gso15g0559 844 MobiDBLite consensus disorder prediction 805 832 - -
Gso15g0559 844 Gene3D - 20 149 IPR036426 -
Gso15g0559 844 ProSiteProfiles Protein kinase domain profile. 525 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0559 844 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Gso15g0559 844 CDD PAN_AP_plant 338 422 - -
Gso15g0559 844 SUPERFAMILY Protein kinase-like (PK-like) 503 796 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0559 Gso-Chr15 4947408 4953983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0559 513 844 Receptor kinase-like Gene Family AT4G11530 58.160 3.28e-133 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso15g0559 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0559 - - gmx:100797331 1707.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0559 15 4947408 4953983 Gso11g2736 11 43288737 43294172 GST